FFCP PHASE1:Hg19::chr7:155601826..155601846,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:155601826..155601846,-
|short_description=p3@SHH
|description=CAGE_peak_3_at_SHH_5end
|association_with_transcript=-60bp_to_ENST00000430104,ENST00000435425...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6469 | |EntrezGene=6469 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10848 | |HGNC=10848 | ||
|TSSclassifier=strong | |||
|UniProt=C9JC48,F8WEH4,F8WB84 | |UniProt=C9JC48,F8WEH4,F8WB84 | ||
|association_with_transcript=-60bp_to_ENST00000430104,ENST00000435425,ENST00000441114,uc003wmh.1,uc003wmi.1,uc003wmj.1_5end | |||
|cluster_id=chr7:155601826..155601846,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SHH_5end | |||
|id=chr7:155601826..155601846,- | |||
|ontology_enrichment_celltype=CL:0000181!1.80e-12!12;CL:0000417!1.80e-12!12;CL:0000668!1.80e-12!12;CL:0000414!1.80e-12!12;CL:0000412!1.80e-12!12;CL:0000182!1.80e-12!12;CL:1000497!2.22e-09!18;CL:0002518!2.22e-09!18;CL:1000507!1.92e-08!12;CL:1000494!1.92e-08!12;CL:0000223!4.76e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.21e-32;12!CL:0000313;3.12e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.41e-32,12;CL:0000223,6.82e-15,58;CL:0000313,1.99e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.18e-38;13!UBERON:0004161;9.08e-35;11!UBERON:0001041;3.81e-20;30!UBERON:0003104;7.36e-15;31!CL:0000223;2.34e-10;58!UBERON:0006242;3.12e-09;1 | |||
|ontology_enrichment_disease=DOID:3493!9.09e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:2152;3.12e-09;1!DOID:299;7.83e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.99e-09,1;DOID:299,8.26e-08,25;DOID:305,3.48e-07,106 | |||
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| ||
|short_description=p3@SHH | |||
}} | }} |
Latest revision as of 10:22, 17 September 2015
Short description: | p3@SHH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHH_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -60bp_to_ENST00000430104, ENST00000435425, ENST00000441114, uc003wmh.1, uc003wmi.1, uc003wmj.1_5end |
EntrezGene: | SHH |
HGNC: | 10848 |
UniProt: | C9JC48F8WEH4F8WB84 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.41e-32 | 12 |
endodermal cell | 6.82e-15 | 58 |
serous secreting cell | 1.99e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.99e-09 | 1 |
adenocarcinoma | 8.26e-08 | 25 |
carcinoma | 3.48e-07 | 106 |