FFCP PHASE1:Hg19::chr7:101459263..101459310,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:101459263..101459310,+
|short_description=p1@CUX1
|description=CAGE_peak_1_at_CUX1_5end
|association_with_transcript=0bp_to_ENST00000292538,ENST00000360264...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1523 | |EntrezGene=1523 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2557 | |HGNC=2557 | ||
|TSSclassifier=strong | |||
|UniProt=P39880,Q13948,G3V1Z6,B4DZZ2 | |UniProt=P39880,Q13948,G3V1Z6,B4DZZ2 | ||
|association_with_transcript=0bp_to_ENST00000292538,ENST00000360264,ENST00000393824,ENST00000425244,ENST00000547394,NM_001202546,uc003uys.3,uc003uyt.2,uc003uyu.2,uc003uyv.2,uc003uyw.2,uc011kkn.1_5end | |||
|cluster_id=chr7:101459263..101459310,+ | |||
|description=CAGE_peak_1_at_CUX1_5end | |||
|id=chr7:101459263..101459310,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.18e-21!42;CL:0000766!1.29e-17!76;CL:0000860!1.51e-17!45;CL:0000557!3.66e-16!71;CL:0002009!1.85e-15!65;CL:0000839!2.07e-15!70;CL:0002194!2.51e-15!63;CL:0000576!2.51e-15!63;CL:0000040!2.51e-15!63;CL:0000559!2.51e-15!63;CL:0000763!1.20e-14!112;CL:0000049!1.20e-14!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.56e-19;33!CL:0002057;2.56e-19;33!CL:0000473;7.07e-16;39!CL:0000234;7.07e-16;39!CL:0000576;1.23e-12;48!CL:0000766;9.03e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.18e-21,42;CL:0002057,1.18e-21,42;CL:0000473,2.40e-21,48;CL:0000234,2.40e-21,48;CL:0000766,3.67e-20,72;CL:0000557,1.12e-18,67;CL:0002009,4.71e-18,61;CL:0002194,5.79e-18,59;CL:0000576,5.79e-18,59;CL:0000040,5.79e-18,59;CL:0000559,5.79e-18,59;CL:0000839,7.26e-18,66;CL:0000763,2.28e-16,108;CL:0000049,2.28e-16,108;CL:0000738,2.22e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;6.18e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.60e-13!80;UBERON:0001474!1.81e-12!86;UBERON:0002390!2.48e-12!102;UBERON:0003061!2.48e-12!102;UBERON:0002405!1.64e-11!115;UBERON:0002193!2.34e-11!112;UBERON:0004765!4.35e-10!101;UBERON:0001434!4.35e-10!101;UBERON:0007023!1.20e-09!115;UBERON:0000062!7.98e-08!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.46e-15,76;UBERON:0001474,2.65e-14,82;UBERON:0002405,2.76e-14,93;UBERON:0002390,5.82e-14,98;UBERON:0003061,5.82e-14,98;UBERON:0004765,6.99e-13,90;UBERON:0002193,8.30e-13,108;UBERON:0001434,7.68e-11,100;UBERON:0007023,1.09e-09,114;UBERON:0003081,2.86e-07,203 | |||
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|short_description=p1@CUX1 | |||
}} | }} |
Latest revision as of 18:14, 24 September 2015
Short description: | p1@CUX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CUX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000292538, ENST00000360264, ENST00000393824, ENST00000425244, ENST00000547394, NM_001202546, uc003uys.3, uc003uyt.2, uc003uyu.2, uc003uyv.2, uc003uyw.2, uc011kkn.1_5end |
EntrezGene: | CUX1 |
HGNC: | 2557 |
UniProt: | P39880Q13948G3V1Z6B4DZZ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.18e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.18e-21 | 42 |
defensive cell | 2.40e-21 | 48 |
phagocyte | 2.40e-21 | 48 |
myeloid leukocyte | 3.67e-20 | 72 |
granulocyte monocyte progenitor cell | 1.12e-18 | 67 |
macrophage dendritic cell progenitor | 4.71e-18 | 61 |
monopoietic cell | 5.79e-18 | 59 |
monocyte | 5.79e-18 | 59 |
monoblast | 5.79e-18 | 59 |
promonocyte | 5.79e-18 | 59 |
myeloid lineage restricted progenitor cell | 7.26e-18 | 66 |
myeloid cell | 2.28e-16 | 108 |
common myeloid progenitor | 2.28e-16 | 108 |
leukocyte | 2.22e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.46e-15 | 76 |
bone element | 2.65e-14 | 82 |
immune system | 2.76e-14 | 93 |
hematopoietic system | 5.82e-14 | 98 |
blood island | 5.82e-14 | 98 |
skeletal element | 6.99e-13 | 90 |
hemolymphoid system | 8.30e-13 | 108 |
skeletal system | 7.68e-11 | 100 |
adult organism | 1.09e-09 | 114 |
lateral plate mesoderm | 2.86e-07 | 203 |