FFCP PHASE1:Hg19::chr6:99850561..99850620,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:99850561..99850620,-
|short_description=p6@PNISR
|description=CAGE_peak_6_at_PNISR_5end
|association_with_transcript=-88bp_to_ENST00000481229_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25957 | |EntrezGene=25957 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21222 | |HGNC=21222 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-88bp_to_ENST00000481229_5end | |||
|cluster_id=chr6:99850561..99850620,- | |||
|coexpression_cluster_id=C905 | |||
|description=CAGE_peak_6_at_PNISR_5end | |||
|id=chr6:99850561..99850620,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.12e-12!235;DOID:14566!5.74e-12!239;DOID:2531!2.54e-07!51;DOID:0060083!2.54e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,9.61e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.21e-12!57;UBERON:0005068!3.21e-12!57;UBERON:0006241!3.21e-12!57;UBERON:0007135!3.21e-12!57;UBERON:0002780!5.75e-11!41;UBERON:0001890!5.75e-11!41;UBERON:0006240!5.75e-11!41;UBERON:0003080!3.33e-10!42;UBERON:0002020!1.41e-09!34;UBERON:0003528!1.41e-09!34;UBERON:0000073!1.59e-09!94;UBERON:0001016!1.59e-09!94;UBERON:0001017!2.05e-09!82;UBERON:0005743!9.83e-09!86;UBERON:0002616!1.71e-08!59;UBERON:0002791!4.62e-08!33;UBERON:0000955!6.72e-08!69;UBERON:0006238!6.72e-08!69;UBERON:0001893!7.21e-08!34;UBERON:0001869!7.26e-08!32;UBERON:0007023!1.21e-07!115;UBERON:0002346!2.54e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.40e-10;41!UBERON:0001890;7.40e-10;41!UBERON:0003528;5.08e-09;34!UBERON:0002020;5.08e-09;34!UBERON:0000073;6.48e-09;53!UBERON:0002616;6.48e-09;53!UBERON:0002791;7.28e-09;32!UBERON:0002619;3.62e-08;22!UBERON:0001869;6.08e-08;32!UBERON:0001893;2.52e-07;34!UBERON:0001950;9.06e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.21e-16,56;UBERON:0005068,2.21e-16,56;UBERON:0006241,2.21e-16,56;UBERON:0007135,2.21e-16,56;UBERON:0000073,1.76e-14,53;UBERON:0002616,1.76e-14,53;UBERON:0002780,6.59e-13,41;UBERON:0001890,6.59e-13,41;UBERON:0003080,6.59e-13,41;UBERON:0006240,6.59e-13,41;UBERON:0001017,1.16e-12,81;UBERON:0001016,2.57e-12,89;UBERON:0002346,6.89e-12,86;UBERON:0003528,3.85e-11,34;UBERON:0002020,3.85e-11,34;UBERON:0000955,1.29e-10,68;UBERON:0006238,1.29e-10,68;UBERON:0003075,1.64e-10,82;UBERON:0007284,1.64e-10,82;UBERON:0002791,8.51e-10,32;UBERON:0007023,1.47e-09,114;UBERON:0001893,9.33e-09,34;UBERON:0001869,1.31e-08,32;UBERON:0002619,3.18e-08,22;UBERON:0003056,7.62e-07,61;UBERON:0001950,8.28e-07,20;UBERON:0002420,9.70e-07,9;UBERON:0007245,9.70e-07,9;UBERON:0010009,9.70e-07,9;UBERON:0010011,9.70e-07,9;UBERON:0000454,9.70e-07,9 | |||
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| ||
|short_description=p6@PNISR | |||
}} | }} |
Latest revision as of 06:22, 20 September 2015
Short description: | p6@PNISR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PNISR_5end |
Coexpression cluster: | C905_cerebellum_occipital_anaplastic_middle_parietal_Neutrophils_olfactory |
Association with transcript: | -88bp_to_ENST00000481229_5end |
EntrezGene: | PNISR |
HGNC: | 21222 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.21e-16 | 56 |
neural rod | 2.21e-16 | 56 |
future spinal cord | 2.21e-16 | 56 |
neural keel | 2.21e-16 | 56 |
regional part of nervous system | 1.76e-14 | 53 |
regional part of brain | 1.76e-14 | 53 |
regional part of forebrain | 6.59e-13 | 41 |
forebrain | 6.59e-13 | 41 |
anterior neural tube | 6.59e-13 | 41 |
future forebrain | 6.59e-13 | 41 |
central nervous system | 1.16e-12 | 81 |
nervous system | 2.57e-12 | 89 |
neurectoderm | 6.89e-12 | 86 |
brain grey matter | 3.85e-11 | 34 |
gray matter | 3.85e-11 | 34 |
brain | 1.29e-10 | 68 |
future brain | 1.29e-10 | 68 |
neural plate | 1.64e-10 | 82 |
presumptive neural plate | 1.64e-10 | 82 |
regional part of telencephalon | 8.51e-10 | 32 |
adult organism | 1.47e-09 | 114 |
telencephalon | 9.33e-09 | 34 |
cerebral hemisphere | 1.31e-08 | 32 |
regional part of cerebral cortex | 3.18e-08 | 22 |
pre-chordal neural plate | 7.62e-07 | 61 |
neocortex | 8.28e-07 | 20 |
basal ganglion | 9.70e-07 | 9 |
nuclear complex of neuraxis | 9.70e-07 | 9 |
aggregate regional part of brain | 9.70e-07 | 9 |
collection of basal ganglia | 9.70e-07 | 9 |
cerebral subcortex | 9.70e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
leukemia | 9.61e-07 | 39 |