FFCP PHASE1:Hg19::chr6:43737939..43737956,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:43737939..43737956,+
|short_description=p1@VEGFA
|description=CAGE_peak_1_at_VEGFA_5end
|association_with_transcript=0bp_to_ENST00000372067,NM_001025366,NM...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7422 | |EntrezGene=7422 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12680 | |HGNC=12680 | ||
|TSSclassifier=strong | |||
|UniProt=P15692,Q6WZM0 | |UniProt=P15692,Q6WZM0 | ||
|association_with_transcript=0bp_to_ENST00000372067,NM_001025366,NM_001025367,NM_001025368,NM_001025369,NM_001025370,NM_001033756,NM_001171622,NM_001171623,NM_001171624,NM_001171625,NM_001171626,NM_001171627,NM_001171628,NM_001171629,NM_001171630,NM_001204384,NM_001204385,NM_003376,uc003owb.2,uc003owc.2,uc003owd.2,uc003owe.2,uc003owf.2,uc003owg.2,uc003owh.2,uc003owi.2,uc003owj.2,uc010jyx.2_5end | |||
|cluster_id=chr6:43737939..43737956,+ | |||
|coexpression_cluster_id=C356 | |||
|description=CAGE_peak_1_at_VEGFA_5end | |||
|id=chr6:43737939..43737956,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.01e-07;33!CL:0002057;7.01e-07;33 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.51e-09!14;DOID:120!9.47e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.36e-09;14!DOID:120;9.08e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.49e-09,14;DOID:120,9.46e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000468!6.37e-08!659;UBERON:0000062!1.80e-07!511;UBERON:0000467!4.61e-07!625;UBERON:0000480!4.66e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.80e-07,160;UBERON:0000925,9.80e-07,160;UBERON:0006595,9.80e-07,160 | |||
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| ||
|short_description=p1@VEGFA | |||
}} | }} |
Latest revision as of 22:56, 18 September 2015
Short description: | p1@VEGFA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VEGFA_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | 0bp_to_ENST00000372067, NM_001025366, NM_001025367, NM_001025368, NM_001025369, NM_001025370, NM_001033756, NM_001171622, NM_001171623, NM_001171624, NM_001171625, NM_001171626, NM_001171627, NM_001171628, NM_001171629, NM_001171630, NM_001204384, NM_001204385, NM_003376, uc003owb.2, uc003owc.2, uc003owd.2, uc003owe.2, uc003owf.2, uc003owg.2, uc003owh.2, uc003owi.2, uc003owj.2, uc010jyx.2_5end |
EntrezGene: | VEGFA |
HGNC: | 12680 |
UniProt: | P15692Q6WZM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.80e-07 | 160 |
endoderm | 9.80e-07 | 160 |
presumptive endoderm | 9.80e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.49e-09 | 14 |
female reproductive organ cancer | 9.46e-07 | 27 |