FFCP PHASE1:Hg19::chr6:32731299..32731316,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:32731299..32731316,-
|short_description=p1@HLA-DQB2
|description=CAGE_peak_1_at_HLA-DQB2_5end
|association_with_transcript=0bp_to_ENST00000435145,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3120 | |EntrezGene=3120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4945 | |HGNC=4945 | ||
|TSSclassifier=strong | |||
|UniProt=A2ADX3,Q5SR05 | |UniProt=A2ADX3,Q5SR05 | ||
|association_with_transcript=0bp_to_ENST00000435145,ENST00000437316_5end | |||
|cluster_id=chr6:32731299..32731316,- | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_1_at_HLA-DQB2_5end | |||
|id=chr6:32731299..32731316,- | |||
|ontology_enrichment_celltype=CL:0002009!3.05e-14!65;CL:0000738!1.43e-13!140;CL:0000557!2.92e-13!71;CL:0000990!1.72e-12!8;CL:0002194!2.73e-12!63;CL:0000576!2.73e-12!63;CL:0000040!2.73e-12!63;CL:0000559!2.73e-12!63;CL:0002087!1.97e-11!119;CL:0002031!1.98e-11!124;CL:0000839!3.71e-11!70;CL:0002057!1.11e-10!42;CL:0000766!1.56e-10!76;CL:0000453!2.83e-10!5;CL:0000451!7.39e-10!10;CL:0000860!1.35e-09!45;CL:0000037!3.05e-09!172;CL:0000566!3.05e-09!172;CL:0002032!6.78e-09!165;CL:0000837!6.78e-09!165;CL:0000763!7.97e-09!112;CL:0000049!7.97e-09!112;CL:0000988!4.51e-08!182;CL:0000840!1.55e-07!5;CL:0001029!1.55e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000453;1.24e-23;5!CL:0000990;3.19e-18;8!CL:0000451;8.74e-15;10!CL:0000860;3.40e-11;33!CL:0002057;3.40e-11;33!CL:0001014;1.46e-10;2!CL:0001016;1.46e-10;2!CL:0000473;1.40e-09;39!CL:0000234;1.40e-09;39!CL:0000840;1.67e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.24e-23,5;CL:0000990,3.14e-18,8;CL:0000451,8.64e-15,10;CL:0000738,5.77e-13,136;CL:0002009,6.54e-11,61;CL:0001014,1.46e-10,2;CL:0001016,1.46e-10,2;CL:0002031,6.90e-10,120;CL:0000557,1.12e-09,67;CL:0000037,1.85e-09,168;CL:0002087,3.56e-09,115;CL:0002032,4.30e-09,161;CL:0000837,4.30e-09,161;CL:0000473,7.04e-09,48;CL:0000234,7.04e-09,48;CL:0000988,1.04e-08,177;CL:0000860,1.13e-08,42;CL:0002057,1.13e-08,42;CL:0002194,4.81e-08,59;CL:0000576,4.81e-08,59;CL:0000040,4.81e-08,59;CL:0000559,4.81e-08,59;CL:0000763,6.20e-08,108;CL:0000049,6.20e-08,108;CL:0000840,1.65e-07,5;CL:0001029,1.65e-07,5;CL:0000839,5.90e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.89e-28!115;UBERON:0002390!3.37e-14!102;UBERON:0003061!3.37e-14!102;UBERON:0002193!7.53e-14!112;UBERON:0002371!8.29e-11!80;UBERON:0002405!1.67e-10!115;UBERON:0001474!1.76e-09!86;UBERON:0004765!1.50e-07!101;UBERON:0001434!1.50e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.19e-10;2!UBERON:0005058;5.19e-10;2!UBERON:0009113;5.19e-10;2!UBERON:0004177;2.22e-08;5!UBERON:0005057;2.22e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.23e-14,108;UBERON:0002390,6.68e-13,98;UBERON:0003061,6.68e-13,98;UBERON:0002405,2.15e-12,93;UBERON:0002371,3.38e-08,76;UBERON:0001474,2.16e-07,82;UBERON:0001042,2.77e-07,10;UBERON:0009145,2.77e-07,10 | |||
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| ||
|short_description=p1@HLA-DQB2 | |||
}} | }} |
Latest revision as of 03:55, 18 September 2015
Short description: | p1@HLA-DQB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DQB2_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | 0bp_to_ENST00000435145, ENST00000437316_5end |
EntrezGene: | HLA-DQB2 |
HGNC: | 4945 |
UniProt: | A2ADX3Q5SR05 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.24e-23 | 5 |
conventional dendritic cell | 3.14e-18 | 8 |
dendritic cell | 8.64e-15 | 10 |
leukocyte | 5.77e-13 | 136 |
macrophage dendritic cell progenitor | 6.54e-11 | 61 |
CD1a-positive Langerhans cell | 1.46e-10 | 2 |
immature CD1a-positive Langerhans cell | 1.46e-10 | 2 |
hematopoietic lineage restricted progenitor cell | 6.90e-10 | 120 |
granulocyte monocyte progenitor cell | 1.12e-09 | 67 |
hematopoietic stem cell | 1.85e-09 | 168 |
nongranular leukocyte | 3.56e-09 | 115 |
hematopoietic oligopotent progenitor cell | 4.30e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.30e-09 | 161 |
defensive cell | 7.04e-09 | 48 |
phagocyte | 7.04e-09 | 48 |
hematopoietic cell | 1.04e-08 | 177 |
classical monocyte | 1.13e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-08 | 42 |
monopoietic cell | 4.81e-08 | 59 |
monocyte | 4.81e-08 | 59 |
monoblast | 4.81e-08 | 59 |
promonocyte | 4.81e-08 | 59 |
myeloid cell | 6.20e-08 | 108 |
common myeloid progenitor | 6.20e-08 | 108 |
immature conventional dendritic cell | 1.65e-07 | 5 |
common dendritic progenitor | 1.65e-07 | 5 |
myeloid lineage restricted progenitor cell | 5.90e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.23e-14 | 108 |
hematopoietic system | 6.68e-13 | 98 |
blood island | 6.68e-13 | 98 |
immune system | 2.15e-12 | 93 |
bone marrow | 3.38e-08 | 76 |
bone element | 2.16e-07 | 82 |
chordate pharynx | 2.77e-07 | 10 |
pharyngeal region of foregut | 2.77e-07 | 10 |