FFCP PHASE1:Hg19::chr6:32489750..32489782,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:32489750..32489782,-
|short_description=p8@HLA-DRB5
|description=CAGE_peak_8_at_HLA-DRB5_5end
|association_with_transcript=51bp_to_M16086,M30182_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3127 | |EntrezGene=3127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4953 | |HGNC=4953 | ||
|TSSclassifier=strong | |||
|UniProt=Q29973,Q30009 | |UniProt=Q29973,Q30009 | ||
|association_with_transcript=51bp_to_M16086,M30182_5end | |||
|cluster_id=chr6:32489750..32489782,- | |||
|description=CAGE_peak_8_at_HLA-DRB5_5end | |||
|id=chr6:32489750..32489782,- | |||
|ontology_enrichment_celltype=CL:0002087!6.87e-15!119;CL:0002009!3.15e-14!65;CL:0002031!4.55e-14!124;CL:0000738!5.18e-14!140;CL:0000557!1.86e-13!71;CL:0002194!2.03e-12!63;CL:0000576!2.03e-12!63;CL:0000040!2.03e-12!63;CL:0000559!2.03e-12!63;CL:0000839!1.83e-11!70;CL:0000766!9.82e-11!76;CL:0002057!2.11e-10!42;CL:0000860!2.47e-09!45;CL:0000037!5.79e-09!172;CL:0000566!5.79e-09!172;CL:0002032!1.30e-08!165;CL:0000837!1.30e-08!165;CL:0000988!2.83e-08!182;CL:0000840!2.85e-07!5;CL:0001029!2.85e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.27e-11;39!CL:0000234;2.27e-11;39!CL:0000860;4.24e-10;33!CL:0002057;4.24e-10;33!CL:0000167;5.77e-07;1!CL:0000164;5.77e-07;1!CL:0000502;5.77e-07;1!CL:0000172;5.77e-07;1!CL:0000173;5.77e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,8.66e-14,67;CL:0002009,3.43e-13,61;CL:0000839,6.61e-12,66;CL:0002194,1.64e-11,59;CL:0000576,1.64e-11,59;CL:0000040,1.64e-11,59;CL:0000559,1.64e-11,59;CL:0000766,1.02e-10,72;CL:0000473,2.15e-10,48;CL:0000234,2.15e-10,48;CL:0000860,9.33e-08,42;CL:0002057,9.33e-08,42;CL:0002031,1.15e-07,120;CL:0000763,1.51e-07,108;CL:0000049,1.51e-07,108;CL:0000738,1.69e-07,136;CL:0000167,3.01e-07,1;CL:0000164,3.01e-07,1;CL:0000502,3.01e-07,1;CL:0000172,3.01e-07,1;CL:0000173,3.01e-07,1;CL:0002351,3.01e-07,1;CL:0002087,5.98e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-07;42!CL:0002351;5.77e-07;1!UBERON:0008801;5.77e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.59e-07;1!DOID:0060061;2.59e-07;1!DOID:3347;2.59e-07;1!DOID:8691;2.59e-07;1!DOID:4430;5.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,2.37e-07,1;DOID:0060060,2.67e-07,1;DOID:0060061,2.67e-07,1;DOID:8691,2.67e-07,1;DOID:4430,3.01e-07,1;DOID:5093,8.95e-07,4;DOID:1612,8.95e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.00e-14!102;UBERON:0003061!2.00e-14!102;UBERON:0002193!6.21e-13!112;UBERON:0002371!8.55e-12!80;UBERON:0001474!2.35e-11!86;UBERON:0002405!2.80e-09!115;UBERON:0004765!4.78e-09!101;UBERON:0001434!4.78e-09!101;UBERON:0003081!1.62e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;5.77e-07;1!UBERON:0001567;5.77e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.42e-12,82;UBERON:0002371,7.64e-12,76;UBERON:0004765,3.39e-11,90;UBERON:0002390,4.74e-10,98;UBERON:0003061,4.74e-10,98;UBERON:0001434,8.75e-10,100;UBERON:0002405,3.42e-09,93;UBERON:0002193,7.53e-09,108;UBERON:0001831,8.67e-07,1;UBERON:0001567,8.67e-07,1;UBERON:0008801,8.67e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0.447830948479849,0,1.03030227053675,0,1.13362783106643,0,0,3.28934310417461,0,0,9.99026755463492,0,0,1.29096936716765,0,0,0.545812300115692,0,0,0.641858054152187,0,0,10.9705011691898,0,0,2.26954089876456,0.622822248995575,0,4.17186334736161,0.217188844705117,0,1.10483290796269,0,0.633765858935825,0.637812899895131,0.209658645508376,0.44931452458598,0.450530678524519,0,0.285012743741249,0.99458338599545,0,0,0,0.889509253863555,0,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0.451725357233318,0.383959833463255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.589405839739707,0,0,0.97364218096405,0.522389211897802,1.19662164466979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.348581828608555,0.829288440122964,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,1.58040879591855,0.858486162094873,0.492434012174795,1.8720341211139,1.63494278517601,0,0.335964256397719,0,0,0,0,0,0,0,0,1.2624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0.431255149719035,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.45142721309787,0.213455115606889,0.606255142892519,1.66435439510497,0,0,0,0,0,0,0,0,0,0.355123450626254,0,0,0,0,0,0,0,0,0,0,0.231046011313244,0,1.46139224653261,0.527758144464379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.47748896947538,0.296964680832639,1.22864280839693,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0,0,0.986434056369336,0,0,0,0.0927680981618513,0,2.60427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,1.08647371922008,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.189559738885464,0.901940516486955,1.7626992537532,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.775912131907355,0,0,0,0,0,0,0,0.426905989478705,0.19980960958213,0,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.83088067605837,0.674921674654501,14.702237136601,0,0,1.10327990218877,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38823636338003,0.628817220398664,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0.465788870628778,0,0.265841714557995,0,0.450772826991655,0.761610424337591,0,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59983614611409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,2.7614397042404,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,1.09651553371436,0,0,0.127762427639595,0,0,0,0,0.354809480650555,0.230467975111559,0,0,0.131545547125698,0,0,0.078493092850514,0,10.9306143692378,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.67984815056688,0,0,0,0,1.88541237681301,0,0,0.4226557275834,0,0.751871343838829,0.386747327841463,0.0999411559249289,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,1.66713136080127,1.07185652062471,0,0,0,0,0,0.31037357147929,0,0.636471582781649,0,0,0,0.336760265072938,0.717222053926764,0,0,0,0,0,0,0,0,0,0.805095174364105,0 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| ||
|short_description=p8@HLA-DRB5 | |||
}} | }} |
Latest revision as of 03:10, 18 September 2015
Short description: | p8@HLA-DRB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_HLA-DRB5_5end |
Coexpression cluster: | NA |
Association with transcript: | 51bp_to_M16086, M30182_5end |
EntrezGene: | HLA-DRB5 |
HGNC: | 4953 |
UniProt: | Q29973Q30009 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 8.66e-14 | 67 |
macrophage dendritic cell progenitor | 3.43e-13 | 61 |
myeloid lineage restricted progenitor cell | 6.61e-12 | 66 |
monopoietic cell | 1.64e-11 | 59 |
monocyte | 1.64e-11 | 59 |
monoblast | 1.64e-11 | 59 |
promonocyte | 1.64e-11 | 59 |
myeloid leukocyte | 1.02e-10 | 72 |
defensive cell | 2.15e-10 | 48 |
phagocyte | 2.15e-10 | 48 |
classical monocyte | 9.33e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.33e-08 | 42 |
hematopoietic lineage restricted progenitor cell | 1.15e-07 | 120 |
myeloid cell | 1.51e-07 | 108 |
common myeloid progenitor | 1.51e-07 | 108 |
leukocyte | 1.69e-07 | 136 |
peptide hormone secreting cell | 3.01e-07 | 1 |
enteroendocrine cell | 3.01e-07 | 1 |
type D enteroendocrine cell | 3.01e-07 | 1 |
somatostatin secreting cell | 3.01e-07 | 1 |
pancreatic D cell | 3.01e-07 | 1 |
progenitor cell of endocrine pancreas | 3.01e-07 | 1 |
nongranular leukocyte | 5.98e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.42e-12 | 82 |
bone marrow | 7.64e-12 | 76 |
skeletal element | 3.39e-11 | 90 |
hematopoietic system | 4.74e-10 | 98 |
blood island | 4.74e-10 | 98 |
skeletal system | 8.75e-10 | 100 |
immune system | 3.42e-09 | 93 |
hemolymphoid system | 7.53e-09 | 108 |
parotid gland | 8.67e-07 | 1 |
cheek | 8.67e-07 | 1 |
parotid gland primordium | 8.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 2.37e-07 | 1 |
non-Hodgkin lymphoma | 2.67e-07 | 1 |
cutaneous T cell lymphoma | 2.67e-07 | 1 |
mycosis fungoides | 2.67e-07 | 1 |
somatostatinoma | 3.01e-07 | 1 |
thoracic cancer | 8.95e-07 | 4 |
breast cancer | 8.95e-07 | 4 |