FFCP PHASE1:Hg19::chr6:31324970..31324974,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:31324970..31324974,-
|short_description=p9@HLA-B
|description=CAGE_peak_9_at_HLA-B_5end
|association_with_transcript=-5bp_to_ENST00000434333_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3106 | |EntrezGene=3106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4932 | |HGNC=4932 | ||
|TSSclassifier=strong | |||
|UniProt=F6U0H7 | |UniProt=F6U0H7 | ||
|association_with_transcript=-5bp_to_ENST00000434333_5end | |||
|cluster_id=chr6:31324970..31324974,- | |||
|description=CAGE_peak_9_at_HLA-B_5end | |||
|id=chr6:31324970..31324974,- | |||
|ontology_enrichment_celltype=CL:0000738!1.41e-24!140;CL:0002087!4.51e-23!119;CL:0002031!8.01e-21!124;CL:0000988!3.93e-18!182;CL:0000766!2.03e-17!76;CL:0002009!6.10e-17!65;CL:0000037!8.66e-17!172;CL:0000566!8.66e-17!172;CL:0002194!9.99e-17!63;CL:0000576!9.99e-17!63;CL:0000040!9.99e-17!63;CL:0000559!9.99e-17!63;CL:0002032!6.28e-16!165;CL:0000837!6.28e-16!165;CL:0000557!2.19e-15!71;CL:0002057!2.84e-15!42;CL:0000048!3.56e-15!430;CL:0000723!1.34e-14!436;CL:0000839!1.98e-14!70;CL:0000034!2.66e-14!444;CL:0000134!2.23e-13!358;CL:0002320!3.38e-13!365;CL:0000860!6.05e-13!45;CL:0000219!8.72e-10!390;CL:0000763!1.73e-09!112;CL:0000049!1.73e-09!112;CL:0000542!6.09e-07!53;CL:0000051!6.09e-07!53;CL:0000838!7.03e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.73e-14;39!CL:0000234;4.73e-14;39!CL:0000860;1.62e-12;33!CL:0002057;1.62e-12;33!CL:0000576;6.85e-10;48!CL:0000766;5.00e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,7.63e-24,115;CL:0000473,1.88e-23,48;CL:0000234,1.88e-23,48;CL:0000738,3.55e-23,136;CL:0002194,5.11e-22,59;CL:0000576,5.11e-22,59;CL:0000040,5.11e-22,59;CL:0000559,5.11e-22,59;CL:0002009,9.70e-22,61;CL:0002031,9.50e-21,120;CL:0000766,1.61e-20,72;CL:0000860,2.44e-19,42;CL:0002057,2.44e-19,42;CL:0000988,5.15e-19,177;CL:0000557,4.46e-18,67;CL:0000037,7.41e-18,168;CL:0000839,1.10e-17,66;CL:0002032,1.02e-16,161;CL:0000837,1.02e-16,161;CL:0000048,5.52e-14,427;CL:0000723,1.06e-13,433;CL:0000034,2.03e-13,441;CL:0000134,3.06e-13,354;CL:0002320,1.64e-12,361;CL:0000763,1.91e-12,108;CL:0000049,1.91e-12,108;CL:0000219,8.44e-10,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.12e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.17e-22!112;UBERON:0002390!4.22e-22!102;UBERON:0003061!4.22e-22!102;UBERON:0002371!1.65e-15!80;UBERON:0002405!1.62e-14!115;UBERON:0002384!5.91e-14!375;UBERON:0001474!7.86e-14!86;UBERON:0004765!1.22e-10!101;UBERON:0001434!1.22e-10!101;UBERON:0003081!2.07e-09!216;UBERON:0002204!1.06e-08!167;UBERON:0000178!1.25e-07!15;UBERON:0000179!1.25e-07!15;UBERON:0000463!1.25e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.90e-09;15!UBERON:0000179;2.90e-09;15!UBERON:0000463;2.90e-09;15!UBERON:0002390;6.49e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.25e-27,108;UBERON:0002390,1.57e-26,98;UBERON:0003061,1.57e-26,98;UBERON:0002405,2.41e-19,93;UBERON:0002371,4.47e-19,76;UBERON:0001474,3.41e-16,82;UBERON:0002384,4.39e-13,371;UBERON:0004765,4.84e-13,90;UBERON:0001434,5.93e-12,100;UBERON:0003081,7.05e-12,203;UBERON:0000178,2.10e-09,15;UBERON:0000179,2.10e-09,15;UBERON:0000463,2.10e-09,15;UBERON:0002204,5.77e-08,167;UBERON:0000926,2.22e-07,315;UBERON:0004120,2.22e-07,315;UBERON:0006603,2.22e-07,315 | |||
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| ||
|short_description=p9@HLA-B | |||
}} | }} |
Latest revision as of 20:24, 17 September 2015
Short description: | p9@HLA-B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_HLA-B_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000434333_5end |
EntrezGene: | HLA-B |
HGNC: | 4932 |
UniProt: | F6U0H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 7.63e-24 | 115 |
defensive cell | 1.88e-23 | 48 |
phagocyte | 1.88e-23 | 48 |
leukocyte | 3.55e-23 | 136 |
monopoietic cell | 5.11e-22 | 59 |
monocyte | 5.11e-22 | 59 |
monoblast | 5.11e-22 | 59 |
promonocyte | 5.11e-22 | 59 |
macrophage dendritic cell progenitor | 9.70e-22 | 61 |
hematopoietic lineage restricted progenitor cell | 9.50e-21 | 120 |
myeloid leukocyte | 1.61e-20 | 72 |
classical monocyte | 2.44e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.44e-19 | 42 |
hematopoietic cell | 5.15e-19 | 177 |
granulocyte monocyte progenitor cell | 4.46e-18 | 67 |
hematopoietic stem cell | 7.41e-18 | 168 |
myeloid lineage restricted progenitor cell | 1.10e-17 | 66 |
hematopoietic oligopotent progenitor cell | 1.02e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.02e-16 | 161 |
multi fate stem cell | 5.52e-14 | 427 |
somatic stem cell | 1.06e-13 | 433 |
stem cell | 2.03e-13 | 441 |
mesenchymal cell | 3.06e-13 | 354 |
connective tissue cell | 1.64e-12 | 361 |
myeloid cell | 1.91e-12 | 108 |
common myeloid progenitor | 1.91e-12 | 108 |
motile cell | 8.44e-10 | 386 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.25e-27 | 108 |
hematopoietic system | 1.57e-26 | 98 |
blood island | 1.57e-26 | 98 |
immune system | 2.41e-19 | 93 |
bone marrow | 4.47e-19 | 76 |
bone element | 3.41e-16 | 82 |
connective tissue | 4.39e-13 | 371 |
skeletal element | 4.84e-13 | 90 |
skeletal system | 5.93e-12 | 100 |
lateral plate mesoderm | 7.05e-12 | 203 |
blood | 2.10e-09 | 15 |
haemolymphatic fluid | 2.10e-09 | 15 |
organism substance | 2.10e-09 | 15 |
musculoskeletal system | 5.77e-08 | 167 |
mesoderm | 2.22e-07 | 315 |
mesoderm-derived structure | 2.22e-07 | 315 |
presumptive mesoderm | 2.22e-07 | 315 |