FFCP PHASE1:Hg19::chr6:21666129..21666155,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:21666129..21666155,+
|short_description=p8@LINC00340
|description=CAGE_peak_8_at_LINC00340_5end
|association_with_transcript=-490bp_to_AK300802_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt=B4DUU8 | |UniProt=B4DUU8 | ||
|association_with_transcript=-490bp_to_AK300802_5end | |||
|cluster_id=chr6:21666129..21666155,+ | |||
|coexpression_cluster_id=C724 | |||
|description=CAGE_peak_8_at_LINC00340_5end | |||
|id=chr6:21666129..21666155,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.48e-13!5;CL:0002605!9.53e-09!3;CL:0000064!1.23e-08!3;CL:0005012!1.23e-08!3;CL:0000067!1.23e-08!3;CL:0002304!1.23e-08!3;CL:0000540!7.94e-08!6;CL:0000031!7.94e-08!6;CL:0000404!7.94e-08!6;CL:0000133!4.89e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.24e-23;6!CL:0000404;1.24e-23;6!CL:1001319;4.72e-17;1!CL:1000600;4.72e-17;1!CL:0002319;2.25e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.87e-24,6;CL:0000031,9.87e-24,6;CL:0000404,9.87e-24,6;CL:0000047,5.58e-18,8;CL:1001319,4.72e-17,1;CL:1000600,4.72e-17,1;CL:0002319,2.20e-09,25 | |||
|ontology_enrichment_development_v019=CL:0000031;1.24e-23;6 | |||
|ontology_enrichment_disease=DOID:5409!9.69e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.85e-16;4!DOID:1325;1.04e-09;7!DOID:3904;1.04e-09;7!DOID:3905;9.52e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.07e-16,4;DOID:1325,1.09e-09,7;DOID:3904,1.09e-09,7;DOID:3905,9.85e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.23e-08!3;UBERON:0001775!1.23e-08!3;UBERON:0000922!5.04e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;4.72e-17;1!UBERON:0001256;4.72e-17;1!UBERON:0001259;4.72e-17;1!UBERON:0002134;1.93e-16;1!UBERON:0005208;1.93e-16;1!UBERON:0004145;1.93e-16;1!UBERON:0005946;1.93e-16;1!UBERON:0005965;1.93e-16;1!UBERON:0002078;1.93e-16;1!UBERON:0001255;3.43e-09;2!UBERON:0001556;3.43e-09;2!UBERON:0002081;6.93e-09;2!UBERON:0002133;6.93e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,4.72e-17,1;UBERON:0001256,4.72e-17,1;UBERON:0001259,4.72e-17,1;UBERON:0002134,2.25e-16,1;UBERON:0005208,2.25e-16,1;UBERON:0005946,2.25e-16,1;UBERON:0005965,2.25e-16,1;UBERON:0002078,2.25e-16,1;UBERON:0001255,3.43e-09,2;UBERON:0001556,3.43e-09,2;UBERON:0002081,7.49e-09,2;UBERON:0002133,7.49e-09,2;UBERON:0010227,7.49e-09,2 | |||
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| ||
|short_description=p8@LINC00340 | |||
}} | }} |
Latest revision as of 04:04, 17 September 2015
Short description: | p8@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | -490bp_to_AK300802_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | B4DUU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.87e-24 | 6 |
neuroblast | 9.87e-24 | 6 |
electrically signaling cell | 9.87e-24 | 6 |
neuronal stem cell | 5.58e-18 | 8 |
bladder cell | 4.72e-17 | 1 |
lower urinary tract cell | 4.72e-17 | 1 |
neural cell | 2.20e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 4.72e-17 | 1 |
wall of urinary bladder | 4.72e-17 | 1 |
mucosa of urinary bladder | 4.72e-17 | 1 |
tricuspid valve | 2.25e-16 | 1 |
right atrium valve | 2.25e-16 | 1 |
outflow tract of atrium | 2.25e-16 | 1 |
outflow part of right atrium | 2.25e-16 | 1 |
right cardiac atrium | 2.25e-16 | 1 |
urinary bladder | 3.43e-09 | 2 |
lower urinary tract | 3.43e-09 | 2 |
cardiac atrium | 7.49e-09 | 2 |
atrioventricular valve | 7.49e-09 | 2 |
future cardiac atrium | 7.49e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.07e-16 | 4 |
bronchus cancer | 1.09e-09 | 7 |
bronchogenic carcinoma | 1.09e-09 | 7 |
lung carcinoma | 9.85e-08 | 9 |