FFCP PHASE1:Hg19::chr6:160147925..160148006,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:160147925..160148006,-
|short_description=p6@SOD2
|description=CAGE_peak_6_at_SOD2_5end
|association_with_transcript=0bp_to_ENST00000535561_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4R2 | |UniProt=F5H4R2 | ||
|association_with_transcript=0bp_to_ENST00000535561_5end | |||
|cluster_id=chr6:160147925..160148006,- | |||
|description=CAGE_peak_6_at_SOD2_5end | |||
|id=chr6:160147925..160148006,- | |||
|ontology_enrichment_celltype=CL:0000037!1.84e-28!172;CL:0000566!1.84e-28!172;CL:0000988!2.31e-28!182;CL:0002032!8.85e-26!165;CL:0000837!8.85e-26!165;CL:0000738!1.05e-24!140;CL:0002087!9.24e-20!119;CL:0002031!1.60e-19!124;CL:0000838!4.67e-17!52;CL:0000542!3.89e-16!53;CL:0000051!3.89e-16!53;CL:0000763!4.69e-11!112;CL:0000049!4.69e-11!112;CL:0002057!2.65e-10!42;CL:0000860!4.33e-10!45;CL:0000791!7.53e-10!18;CL:0000789!7.53e-10!18;CL:0002420!7.53e-10!18;CL:0002419!7.53e-10!18;CL:0000790!7.53e-10!18;CL:0000084!4.15e-09!25;CL:0000827!4.15e-09!25;CL:0000766!3.67e-08!76;CL:0000945!8.80e-08!24;CL:0000826!8.80e-08!24;CL:0000625!1.15e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.38e-10;53!CL:0000791;2.72e-10;18!CL:0000789;2.72e-10;18!CL:0002419;2.72e-10;18!CL:0000084;1.25e-09;25!CL:0000625;6.15e-08;11!CL:0000860;8.10e-08;33!CL:0002057;8.10e-08;33!CL:0000945;8.55e-08;24!CL:0002087;1.19e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.78e-30,177;CL:0000037,1.42e-29,168;CL:0002032,8.11e-27,161;CL:0000837,8.11e-27,161;CL:0000738,8.10e-26,136;CL:0002087,8.17e-21,115;CL:0002031,1.73e-20,120;CL:0000838,2.59e-17,52;CL:0000542,2.26e-16,53;CL:0000051,2.26e-16,53;CL:0000763,1.21e-11,108;CL:0000049,1.21e-11,108;CL:0000860,2.35e-10,42;CL:0002057,2.35e-10,42;CL:0000791,5.50e-10,18;CL:0000789,5.50e-10,18;CL:0002420,5.50e-10,18;CL:0002419,5.50e-10,18;CL:0000790,5.50e-10,18;CL:0000084,3.12e-09,25;CL:0000827,3.12e-09,25;CL:0000766,9.04e-09,72;CL:0000945,6.95e-08,24;CL:0000826,6.95e-08,24;CL:0000625,9.15e-08,11;CL:0000473,4.57e-07,48;CL:0000234,4.57e-07,48;CL:0000236,9.41e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.38e-10;53!CL:0000790;2.72e-10;18!CL:0002057;2.77e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.56e-07!102;UBERON:0003061!2.56e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.40e-08,98;UBERON:0003061,7.40e-08,98;UBERON:0002193,5.11e-07,108 | |||
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| ||
|short_description=p6@SOD2 | |||
}} | }} |
Latest revision as of 15:13, 16 September 2015
Short description: | p6@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SOD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535561_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | F5H4R2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.78e-30 | 177 |
hematopoietic stem cell | 1.42e-29 | 168 |
hematopoietic oligopotent progenitor cell | 8.11e-27 | 161 |
hematopoietic multipotent progenitor cell | 8.11e-27 | 161 |
leukocyte | 8.10e-26 | 136 |
nongranular leukocyte | 8.17e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.73e-20 | 120 |
lymphoid lineage restricted progenitor cell | 2.59e-17 | 52 |
lymphocyte | 2.26e-16 | 53 |
common lymphoid progenitor | 2.26e-16 | 53 |
myeloid cell | 1.21e-11 | 108 |
common myeloid progenitor | 1.21e-11 | 108 |
classical monocyte | 2.35e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.35e-10 | 42 |
mature alpha-beta T cell | 5.50e-10 | 18 |
alpha-beta T cell | 5.50e-10 | 18 |
immature T cell | 5.50e-10 | 18 |
mature T cell | 5.50e-10 | 18 |
immature alpha-beta T cell | 5.50e-10 | 18 |
T cell | 3.12e-09 | 25 |
pro-T cell | 3.12e-09 | 25 |
myeloid leukocyte | 9.04e-09 | 72 |
lymphocyte of B lineage | 6.95e-08 | 24 |
pro-B cell | 6.95e-08 | 24 |
CD8-positive, alpha-beta T cell | 9.15e-08 | 11 |
defensive cell | 4.57e-07 | 48 |
phagocyte | 4.57e-07 | 48 |
B cell | 9.41e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.40e-08 | 98 |
blood island | 7.40e-08 | 98 |
hemolymphoid system | 5.11e-07 | 108 |