FFCP PHASE1:Hg19::chr6:160101395..160101402,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:160101395..160101402,-
|short_description=p37@SOD2
|description=CAGE_peak_37_at_SOD2_5end
|association_with_transcript=0bp_to_uc003qsf.3_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003qsf.3_5end | |||
|cluster_id=chr6:160101395..160101402,- | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_37_at_SOD2_5end | |||
|id=chr6:160101395..160101402,- | |||
|ontology_enrichment_celltype=CL:0002057!2.30e-20!42;CL:0000860!2.15e-19!45;CL:0002194!4.92e-17!63;CL:0000576!4.92e-17!63;CL:0000040!4.92e-17!63;CL:0000559!4.92e-17!63;CL:0000766!1.41e-16!76;CL:0002009!3.95e-16!65;CL:0000839!4.13e-14!70;CL:0000557!9.61e-14!71;CL:0000763!8.55e-08!112;CL:0000049!8.55e-08!112;CL:0002087!4.16e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.39e-31;33!CL:0002057;8.39e-31;33!CL:0000473;2.36e-29;39!CL:0000234;2.36e-29;39!CL:0000775;4.05e-20;3!CL:0000766;1.96e-13;69!CL:0000576;2.36e-13;48!CL:0000094;4.71e-13;8!CL:0000081;1.58e-09;11!CL:0000135;3.25e-09;3!CL:0000388;3.25e-09;3!CL:0000763;4.43e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.24e-30,72;CL:0000473,1.98e-30,48;CL:0000234,1.98e-30,48;CL:0000860,8.75e-27,42;CL:0002057,8.75e-27,42;CL:0002194,1.09e-23,59;CL:0000576,1.09e-23,59;CL:0000040,1.09e-23,59;CL:0000559,1.09e-23,59;CL:0002009,8.06e-23,61;CL:0000839,7.15e-21,66;CL:0000557,1.62e-20,67;CL:0000775,4.08e-20,3;CL:0000763,3.68e-19,108;CL:0000049,3.68e-19,108;CL:0000738,2.09e-14,136;CL:0000094,4.58e-13,8;CL:0002032,1.50e-11,161;CL:0000837,1.50e-11,161;CL:0000037,6.65e-11,168;CL:0002087,1.11e-10,115;CL:0000988,3.80e-10,177;CL:0002031,4.17e-10,120;CL:0000081,1.55e-09,11;CL:0000135,3.54e-09,3;CL:0000388,3.54e-09,3;CL:0000134,6.03e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;4.33e-21;42!UBERON:0010226;1.58e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.18e-12!80;UBERON:0001474!1.40e-11!86;UBERON:0002193!5.95e-11!112;UBERON:0002405!7.93e-11!115;UBERON:0004765!3.58e-10!101;UBERON:0001434!3.58e-10!101;UBERON:0002390!4.31e-10!102;UBERON:0003061!4.31e-10!102;UBERON:0002204!1.12e-09!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;3.25e-09;3!UBERON:0004151;3.25e-09;3!UBERON:0000043;3.25e-09;3!UBERON:0007845;3.25e-09;3!UBERON:0002084;1.58e-07;1!UBERON:0002134;1.58e-07;1!UBERON:0001282;1.58e-07;1!UBERON:0009842;1.58e-07;1!UBERON:0003704;1.58e-07;1!UBERON:0002082;1.58e-07;1!UBERON:0005208;1.58e-07;1!UBERON:0004145;1.58e-07;1!UBERON:0005946;1.58e-07;1!UBERON:0001171;1.58e-07;1!UBERON:0001172;1.58e-07;1!UBERON:0005965;1.58e-07;1!UBERON:0002078;1.58e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,3.91e-18,93;UBERON:0002371,9.78e-18,76;UBERON:0001474,3.23e-16,82;UBERON:0002193,3.97e-15,108;UBERON:0001434,1.35e-14,100;UBERON:0004765,1.67e-14,90;UBERON:0002390,4.54e-13,98;UBERON:0003061,4.54e-13,98;UBERON:0002204,6.83e-11,167;UBERON:0004151,2.23e-09,3;UBERON:0007846,3.54e-09,3;UBERON:0000043,3.54e-09,3;UBERON:0007845,3.54e-09,3;UBERON:0002134,1.07e-07,1;UBERON:0005208,1.07e-07,1;UBERON:0005946,1.07e-07,1;UBERON:0005965,1.07e-07,1;UBERON:0002078,1.07e-07,1;UBERON:0002084,1.30e-07,1;UBERON:0002082,1.30e-07,1;UBERON:0010226,1.30e-07,1;UBERON:0001282,1.91e-07,1;UBERON:0009842,1.91e-07,1;UBERON:0003704,1.91e-07,1;UBERON:0001171,1.91e-07,1;UBERON:0001172,1.91e-07,1 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.802177789880567,0,0,0,0,0,0,0.242584061187816,1.16214518452842,0.411167888021826,0,1.1507695692886,1.7931249457037,0.709446689665756,1.37898272294647,0.645484683583826,4.06279459783025,1.12945403725563,0.545812300115692,1.12361742222542,2.14258724659632,0.962787081228281,2.55734850319616,0.329851300186716,0.398927315243264,0,5.80418477257168,1.70215567407342,5.60540024096017,0.251248665256743,1.0429658368404,0.434377689410233,0.605399502633369,1.84138817993782,0.949387162322653,0,0.212604299965044,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.724232594804119,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0.522389211897802,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,2.77791307545966,1.52203321787679,0,0,0,0,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,1.00451418286425,2.10833939483032,0,0,0,0,0.205476322550383,0.537182889719687,0,0,0,0.128343036279748,0,0,0.773288812777695,0,0,2.24702107184155,11.966458368161,1.24324654030811,0,0.500170521059677,0,0,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,1.03850885836724,0,0,0.200506470303285,0,0,0,0.655622074797121,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.290012154876366,0,0,0,0,0.290033387828457,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,1.68886108238131,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0.211125408127993,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,1.13942055847001,0,0.0897576444097721,0,0,0,0.533034776018635,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0.171986032471617,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,1.43574604915363,0,0,0.446342914883745,0,0.360299883542404,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0.335434687599266,0.315222829196793,0,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0,0.58620893471233,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0.244052529803926,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.149254802886874,0,0,0.378806010550178,0.50313580350515,0,0,0,0,0.295710299979268,0.318593534327405,0,0.155262956876259,0,0,0,0.300515217994437,0.761610424337591,0,0.363697318405119,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0.219284049578707,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0.47775168788705,0.0714765441766563,0,0,0.173858272302579,0,0,0,0,0,0,0,0.423387050190929,0,0.31020638566432,0.955538938977433,0.111855431797792,0,0,0,1.12929087541872,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598505450025,1.38652688589425,0,0,0.109265571963696,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 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| ||
|short_description=p37@SOD2 | |||
}} | }} |
Latest revision as of 14:06, 16 September 2015
Short description: | p37@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_37_at_SOD2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 0bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.24e-30 | 72 |
defensive cell | 1.98e-30 | 48 |
phagocyte | 1.98e-30 | 48 |
classical monocyte | 8.75e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.75e-27 | 42 |
monopoietic cell | 1.09e-23 | 59 |
monocyte | 1.09e-23 | 59 |
monoblast | 1.09e-23 | 59 |
promonocyte | 1.09e-23 | 59 |
macrophage dendritic cell progenitor | 8.06e-23 | 61 |
myeloid lineage restricted progenitor cell | 7.15e-21 | 66 |
granulocyte monocyte progenitor cell | 1.62e-20 | 67 |
neutrophil | 4.08e-20 | 3 |
myeloid cell | 3.68e-19 | 108 |
common myeloid progenitor | 3.68e-19 | 108 |
leukocyte | 2.09e-14 | 136 |
granulocyte | 4.58e-13 | 8 |
hematopoietic oligopotent progenitor cell | 1.50e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.50e-11 | 161 |
hematopoietic stem cell | 6.65e-11 | 168 |
nongranular leukocyte | 1.11e-10 | 115 |
hematopoietic cell | 3.80e-10 | 177 |
hematopoietic lineage restricted progenitor cell | 4.17e-10 | 120 |
blood cell | 1.55e-09 | 11 |
fibrocyte | 3.54e-09 | 3 |
tendon cell | 3.54e-09 | 3 |
mesenchymal cell | 6.03e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
immune system | 3.91e-18 | 93 |
bone marrow | 9.78e-18 | 76 |
bone element | 3.23e-16 | 82 |
hemolymphoid system | 3.97e-15 | 108 |
skeletal system | 1.35e-14 | 100 |
skeletal element | 1.67e-14 | 90 |
hematopoietic system | 4.54e-13 | 98 |
blood island | 4.54e-13 | 98 |
musculoskeletal system | 6.83e-11 | 167 |
cardiac chamber | 2.23e-09 | 3 |
dense regular connective tissue | 3.54e-09 | 3 |
tendon | 3.54e-09 | 3 |
regular connective tissue | 3.54e-09 | 3 |
tricuspid valve | 1.07e-07 | 1 |
right atrium valve | 1.07e-07 | 1 |
outflow tract of atrium | 1.07e-07 | 1 |
outflow part of right atrium | 1.07e-07 | 1 |
right cardiac atrium | 1.07e-07 | 1 |
heart left ventricle | 1.30e-07 | 1 |
cardiac ventricle | 1.30e-07 | 1 |
future cardiac ventricle | 1.30e-07 | 1 |
intralobular bile duct | 1.91e-07 | 1 |
acinus | 1.91e-07 | 1 |
intrahepatic bile duct | 1.91e-07 | 1 |
portal lobule | 1.91e-07 | 1 |
hepatic acinus | 1.91e-07 | 1 |