NonredundantMotifs:175: Difference between revisions
From FANTOM5_SSTAR
m (Autoedit moved page NonredundantMotifs:Motif175 to NonredundantMotifs:175 without leaving a redirect: NSchange) |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;26.356958;1.843132;5.774665;19.352389!2;4.343436;27.139605;14.620182;7.223921!3;39.164879;4.986899;0.783074;8.392292!4;3.709227;17.715424;19.696678;12.205815!5;5.100757;13.464341;0.342207;34.419839!6;10.314864;21.39085;7.767938;13.853492!7;28.997275;7.044427;5.580705;11.704737!8;8.634523;5.082359;1.236371;38.373891!9;1.345151;4.546671;43.719455;3.715867!10;13.595815;30.123458;6.979171;2.6287!11;25.660878;0.980055;25.637755;1.048456!12;0.553636;1.574121;1.249371;49.950016!13;0.925279;0;50.012949;2.388916!14;31.431639;2.898633;18.545691;0.451181!15;20.290425;4.284044;24.373452;4.379223!16;13.481204;10.911444;8.091109;20.843387!17;11.18345;12.534003;6.086029;23.523662!18;19.40033;14.342068;13.879891;5.704855 | |PWM=P0;A;C;G;T!1;26.356958;1.843132;5.774665;19.352389!2;4.343436;27.139605;14.620182;7.223921!3;39.164879;4.986899;0.783074;8.392292!4;3.709227;17.715424;19.696678;12.205815!5;5.100757;13.464341;0.342207;34.419839!6;10.314864;21.39085;7.767938;13.853492!7;28.997275;7.044427;5.580705;11.704737!8;8.634523;5.082359;1.236371;38.373891!9;1.345151;4.546671;43.719455;3.715867!10;13.595815;30.123458;6.979171;2.6287!11;25.660878;0.980055;25.637755;1.048456!12;0.553636;1.574121;1.249371;49.950016!13;0.925279;0;50.012949;2.388916!14;31.431639;2.898633;18.545691;0.451181!15;20.290425;4.284044;24.373452;4.379223!16;13.481204;10.911444;8.091109;20.843387!17;11.18345;12.534003;6.086029;23.523662!18;19.40033;14.342068;13.879891;5.704855 | ||
|entrez_gene_id= | |entrez_gene_id=7849 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PAX8.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:PAX8.p2 | ||
|name=non-redundant175 | |name=non-redundant175 | ||
Latest revision as of 15:55, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant175
- db :SWISSREGULON
- Id :PAX8.p2
- name :PAX8
- score :0.11612505426120512
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
