Personal tools

NonredundantMotifs:116: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Known116 to MotifCluster2013March:Non redundant116 without leaving a redirect: NSchange)
No edit summary
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;17.811892;23.718126;235.57367;20.216234!2;189.5473;20.427225;23.359456;63.985941!3;28.064217;7.052422;65.435993;196.76729!4;12.386786;6.521042;12.166767;266.245327!5;28.45556;4.536592;3.368424;260.959346!6;285.785454;4.314371;3.071382;4.148715!7;257.17135;15.935174;5.185202;19.028196!8;56.399198;122.126412;7.639521;111.154791!9;209.108851;7.714919;49.149441;31.346711!10;27.864448;38.655092;6.287882;224.5125!11;240.21541;14.125543;35.257974;7.720995!12;210.10813;6.228612;50.970281;30.012899
|PWM=PO;A;C;G;T!1;17.811892;23.718126;235.57367;20.216234!2;189.5473;20.427225;23.359456;63.985941!3;28.064217;7.052422;65.435993;196.76729!4;12.386786;6.521042;12.166767;266.245327!5;28.45556;4.536592;3.368424;260.959346!6;285.785454;4.314371;3.071382;4.148715!7;257.17135;15.935174;5.185202;19.028196!8;56.399198;122.126412;7.639521;111.154791!9;209.108851;7.714919;49.149441;31.346711!10;27.864448;38.655092;6.287882;224.5125!11;240.21541;14.125543;35.257974;7.720995!12;210.10813;6.228612;50.970281;30.012899
|entrez_gene_id=CDC5L
|entrez_gene_id=988
|motif_cluster_2013_march_motif_members= /HOCOMOCO:CDC5L_si /SWISSREGULON:CDC5L.p2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:CDC5L_si /SWISSREGULON:CDC5L.p2
|name=non-redundant116
|name=non-redundant116

Latest revision as of 15:48, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant116
  • db :SWISSREGULON
  • Id :CDC5L.p2
  • name :CDC5L
  • score :0.04744553038122821
  • External refs:
EntrezGene:988
UniProt:988

  • Internal refs:
EntrezGene:988


Motif matrix
POACGT
117.81189223.718126235.5736720.216234
2189.547320.42722523.35945663.985941
328.0642177.05242265.435993196.76729
412.3867866.52104212.166767266.245327
528.455564.5365923.368424260.959346
6285.7854544.3143713.0713824.148715
7257.1713515.9351745.18520219.028196
856.399198122.1264127.639521111.154791
9209.1088517.71491949.14944131.346711
1027.86444838.6550926.287882224.5125
11240.2154114.12554335.2579747.720995
12210.108136.22861250.97028130.012899

Sub Motif Members