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NonredundantMotifs:49: Difference between revisions

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Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant49
  • db :UNIPROBE
  • Id :Six6_2267.5
  • name :CELL08
  • score :0.04736515660286219
  • External refs:
EntrezGene:4990
UniProt:4990

  • Internal refs:
EntrezGene:4990


Motif matrix
P0ACGT
10.357564700768520.09543816918952840.345110390701850.201886739340102
20.4152060503458360.1087007206655110.160029914566990.316063314421663
30.2767097607773940.1052256376733830.1835967453847790.434467856164444
40.4614805530386930.1352997828232810.3031263526910220.100093311447003
50.1901859403924050.03557823171021720.7282898664540780.0459459614432999
60.04089283537696560.0247943970475630.8894952702832050.0448174972922664
70.1970915233066510.01829719831729740.7811242493957390.00348702898031239
80.005211554865318470.002189538484704540.02742137377233190.965177532877645
90.9701834934343750.002451400873540320.02134008886875450.00602501682332986
100.004644583297163920.002381199432005510.003788026608264660.989186190662566
110.01741325538509170.9553568310120220.007267651742110250.0199622618607764
120.9278894384568160.01851264120298920.01342102991497160.0401768904252236
130.4110602448149990.1391329128591940.09646163466282570.353345207662981
140.2155846225361310.237932429484210.2054224591525990.34106048882706
150.4091887596709120.1347537345284920.08417889161912390.371878614181472
160.2107721904858830.2735864341787110.1080062097500020.407635165585405
170.09178097764901180.1591610988935130.2162875483864850.53277037507099

Sub Motif Members