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NonredundantMotifs:167: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;33.093759;2.568386;42.454575;1.487499!2;51.430673;8.664028;3.306979;16.202539!3;54.947198;4.568207;16.91955;3.169264!4;27.119889;9.335891;38.80781;4.340629!5;15.395579;3.702614;11.439615;49.066411!6;6.982687;0.982121;53.138368;18.501043!7;1.469805;26.182619;0.785121;51.166674!8;1.470865;4.052472;2.40566;71.675222!9;18.33104;2.501553;49.307033;9.464593!10;5.725867;5.884253;4.46143;63.532669!11;3.325094;16.068643;7.509862;52.70062!12;11.636988;6.653376;8.339676;52.974179!13;2.308951;69.989651;3.210888;4.094729!14;63.15204;1.394317;0;15.057862!15;5.513904;2.385672;41.741118;29.963525!16;59.294445;1.745581;16.882375;1.681818!17;3.727559;42.026756;14.586437;19.263467
|PWM=PO;A;C;G;T!1;33.093759;2.568386;42.454575;1.487499!2;51.430673;8.664028;3.306979;16.202539!3;54.947198;4.568207;16.91955;3.169264!4;27.119889;9.335891;38.80781;4.340629!5;15.395579;3.702614;11.439615;49.066411!6;6.982687;0.982121;53.138368;18.501043!7;1.469805;26.182619;0.785121;51.166674!8;1.470865;4.052472;2.40566;71.675222!9;18.33104;2.501553;49.307033;9.464593!10;5.725867;5.884253;4.46143;63.532669!11;3.325094;16.068643;7.509862;52.70062!12;11.636988;6.653376;8.339676;52.974179!13;2.308951;69.989651;3.210888;4.094729!14;63.15204;1.394317;0;15.057862!15;5.513904;2.385672;41.741118;29.963525!16;59.294445;1.745581;16.882375;1.681818!17;3.727559;42.026756;14.586437;19.263467
|entrez_gene_id=FOXP3
|entrez_gene_id=50943
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXP3.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXP3.p2
|name=known167
|name=non-redundant167
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=FOXP3.p2
|representative_motif_id=FOXP3.p2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 15:54, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant167
  • db :SWISSREGULON
  • Id :FOXP3.p2
  • name :FOXP3
  • score :0.11332724732182542
  • External refs:
EntrezGene:50943
UniProt:50943

  • Internal refs:
EntrezGene:50943


Motif matrix
POACGT
133.0937592.56838642.4545751.487499
251.4306738.6640283.30697916.202539
354.9471984.56820716.919553.169264
427.1198899.33589138.807814.340629
515.3955793.70261411.43961549.066411
66.9826870.98212153.13836818.501043
71.46980526.1826190.78512151.166674
81.4708654.0524722.4056671.675222
918.331042.50155349.3070339.464593
105.7258675.8842534.4614363.532669
113.32509416.0686437.50986252.70062
1211.6369886.6533768.33967652.974179
132.30895169.9896513.2108884.094729
1463.152041.394317015.057862
155.5139042.38567241.74111829.963525
1659.2944451.74558116.8823751.681818
173.72755942.02675614.58643719.263467

Sub Motif Members