NonredundantMotifs:52: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif52 to NonredundantMotifs:52 without leaving a redirect: NSchange) |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PWM=PO;A;C;G;T!1;51.564468;13.26941;83.587598;20.713344!2;29.769706;1.549557;137.006756;0.808801!3;47.331201;53.0085;60.032086;8.763033!4;6.262884;20.412521;103.823936;38.635479!5;9.413407;119.391552;20.750723;19.579138!6;80.748263;37.917131;27.549326;22.9201!7;22.669395;77.5497;46.95271;21.963015!8;0.851768;38.78142;47.634237;81.867395!9;6.597761;13.846531;143.939141;4.751387!10;68.84423;28.049027;63.507019;8.734544!11;62.480218;3.161928;86.477998;17.014676!12;2.524252;0.796676;165.813892;0!13;31.641515;119.872266;8.739038;8.882001!14;22.804279;0.865004;142.200698;3.264839!15;10.116801;3.295676;99.181444;56.540899!16;67.115827;7.582506;93.683599;0.752888!17;50.592982;5.386698;109.96488;3.19026!18;26.392076;137.395981;0;5.346763!19;29.592252;74.422791;64.150964;0.968813!20;43.880475;0.851768;116.951804;7.450773 | |PWM=PO;A;C;G;T!1;51.564468;13.26941;83.587598;20.713344!2;29.769706;1.549557;137.006756;0.808801!3;47.331201;53.0085;60.032086;8.763033!4;6.262884;20.412521;103.823936;38.635479!5;9.413407;119.391552;20.750723;19.579138!6;80.748263;37.917131;27.549326;22.9201!7;22.669395;77.5497;46.95271;21.963015!8;0.851768;38.78142;47.634237;81.867395!9;6.597761;13.846531;143.939141;4.751387!10;68.84423;28.049027;63.507019;8.734544!11;62.480218;3.161928;86.477998;17.014676!12;2.524252;0.796676;165.813892;0!13;31.641515;119.872266;8.739038;8.882001!14;22.804279;0.865004;142.200698;3.264839!15;10.116801;3.295676;99.181444;56.540899!16;67.115827;7.582506;93.683599;0.752888!17;50.592982;5.386698;109.96488;3.19026!18;26.392076;137.395981;0;5.346763!19;29.592252;74.422791;64.150964;0.968813!20;43.880475;0.851768;116.951804;7.450773 | ||
|entrez_gene_id=PAX5 | |entrez_gene_id=PAX5 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0014.1;Pax5~MA0069.1;Pax6 /SWISSREGULON:PAX6.p2~PAX5. | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PAX6_f1~PAX5_f1 /HOMER:PAX5_motifA;GM12878-PAX5-ChIP-Seq /JASPAR:MA0014.1;Pax5~MA0069.1;Pax6 /SWISSREGULON:PAX6.p2~PAX5.p2 | ||
|name= | |name=non-redundant52 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=PAX5.p2 | |representative_motif_id=PAX5.p2 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant52
- db :SWISSREGULON
- Id :PAX5.p2
- name :PAX5
- score :4.345335641326596
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
