Personal tools

NonredundantMotifs:40: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page NonredundantMotifs:Motif40 to NonredundantMotifs:40 without leaving a redirect: NSchange)
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.345146488013258;0.26105897598822;0.273931110860127;0.119863425138395!2;0.22213719373244;0.272923002708112;0.332023618603445;0.172916184956003!3;0.269602465977963;0.278951419673728;0.245220682323427;0.206225432024882!4;0.485405791720008;0.144018099371158;0.294420682111543;0.0761554267972912!5;0.577730594798247;0.270563099425945;0.0789547842576704;0.072751521518137!6;0.0700269105790002;0.750815784849967;0.0628186475434988;0.116338657027534!7;0.685017697670726;0.105175239349362;0.137110344038653;0.0726967189412585!8;0.162574046433077;0.071040993448798;0.638464241766771;0.127920718351355!9;0.343240301234647;0.389633340632279;0.206226161983908;0.060900196149167!10;0.0801690845698969;0.790322888125634;0.114210602632884;0.0152974246715846!11;0.167034629133321;0.201642309694909;0.462780389853469;0.168542671318301!12;0.114383107808223;0.664317079667594;0.166143102371949;0.0551567101522349!13;0.39214312802688;0.114474613925907;0.340084685645908;0.153297572401304!14;0.208147487120144;0.577473165873016;0.142693639531859;0.0716857074749806!15;0.16863150929973;0.56313543715974;0.0661812155220432;0.202051838018487
|PWM=P0;A;C;G;T!1;13.172006745362548;17.973018549747092;31.637436762226013;10.217537942664446!2;15.757166947723478;8.863406408094452;7.016863406408105;41.36256323777408!3;0.9848229342327128;6.647554806070832;63.39797639123109;1.969645868465433!4;0.0;0.0;7.139966273187192;65.86003372681289!5;0.0;72.01517706576735;0.0;0.9848229342327128!6;3.446880269814506;1.8465430016863467;0.9848229342327128;66.7217537942665!7;7.632377740303588;0.0;60.56661045531204;4.801011804384492!8;7.509274873524458;15.38785834738616;32.00674536256333;18.09612141652615!9;16.249578414839778;40.13153456998315;10.340640809443503;6.278246205733565!10;7.139966273187192;28.80607082630697;11.940978077571685;25.11298482293423
|entrez_gene_id=4618
|entrez_gene_id=4088
|motif_cluster_2013_march_motif_members= /JASPAR:MA0092.1;Hand1::Tcfe2a /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 /UNIPROBE:Smad3_primary;SCI09~Myf6_secondary;SCI09 /HOCOMOCO:SMAD4_si~HAND1_si~SMAD2_si~SMAD3_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SMAD2_si~HAND1_si~SMAD3_f1~SMAD4_si /JASPAR:MA0092.1;Hand1::Tcfe2a /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 /UNIPROBE:Myf6_secondary;SCI09~Smad3_primary;SCI09
|name=known40
|name=non-redundant40
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Myf6_secondary
|representative_motif_id=SMAD3_f1
|representative_motif_name=SCI09
|representative_motif_name=  
|score=2.726383469789969
|score=0.09834004578654876
|uniprot_entry_name=MYF6_HUMAN
|uniprot_entry_name=SMAD3_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant40
  • db :HOCOMOCO
  • Id :SMAD3_f1
  • name  :
  • score :0.09834004578654876
  • External refs:
EntrezGene:4088
UniProt:4088

  • Internal refs:
EntrezGene:4088


Motif matrix
P0ACGT
113.17200674536254817.97301854974709231.63743676222601310.217537942664446
215.7571669477234788.8634064080944527.01686340640810541.36256323777408
30.98482293423271286.64755480607083263.397976391231091.969645868465433
40.00.07.13996627318719265.86003372681289
50.072.015177065767350.00.9848229342327128
63.4468802698145061.84654300168634670.984822934232712866.7217537942665
77.6323777403035880.060.566610455312044.801011804384492
87.50927487352445815.3878583473861632.0067453625633318.09612141652615
916.24957841483977840.1315345699831510.3406408094435036.278246205733565
107.13996627318719228.8060708263069711.94097807757168525.11298482293423

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:40&oldid=2579305"