NonredundantMotifs:27: Difference between revisions
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|PWM=PO;A;C;G;T!1;3324;801;1697;2790!2;844;43;6261;1464!3;17;9;8552;34!4;9;9;8310;284!5;3049;9;5356;198!6;5177;1188;1481;766!7;3057;620;138;4797!8;267;121;146;8078!9;9;1662;9;6932!10;9;7027;9;1567!11;17;8388;9;198!12;2248;5235;164;965 | |PWM=PO;A;C;G;T!1;3324;801;1697;2790!2;844;43;6261;1464!3;17;9;8552;34!4;9;9;8310;284!5;3049;9;5356;198!6;5177;1188;1481;766!7;3057;620;138;4797!8;267;121;146;8078!9;9;1662;9;6932!10;9;7027;9;1567!11;17;8388;9;198!12;2248;5235;164;965 | ||
|entrez_gene_id=5970 | |entrez_gene_id=5970 | ||
|motif_cluster_2013_march_motif_members= /JASPAR: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NFKB2_f1~ZEP1_f1~TF65_f2~RELB_si~NFKB1_f1~REL_do /HOMER:NFKB1_p50-ChIP-Chip~RELA_GM12787-p65-ChIP-Seq /JASPAR:MA0101.1;REL~MA0105.1;NFKB1~MA0061.1;NF-kappaB~MA0107.1;RELA /SWISSREGULON:NFKB1_REL_RELA.p2 | ||
|name= | |name=non-redundant27 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=RELA_GM12787-p65-ChIP-Seq | |representative_motif_id=RELA_GM12787-p65-ChIP-Seq | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant27
- db :HOMER
- Id :RELA_GM12787-p65-ChIP-Seq
- name :
- score :0.6841308706017131
- External refs:
- Internal refs:
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Sub Motif Members
