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NonredundantMotifs:201: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;79.334802;30.187075;11.671023;39.11148!2;75.758951;39.804695;33.95761;10.783124!3;49.264106;46.809618;10.776781;53.453875!4;1.624345;0.749118;0;157.930917!5;136.373394;4.4525;5.369937;14.108549!6;158.727167;0;0;1.577213!7;1.508366;7.678933;0.690944;150.426137!8;0.695534;11.381705;13.351513;134.875628!9;88.004985;21.998116;16.720946;33.580333!10;47.758261;39.506319;24.613038;48.426762!11;31.136202;60.868109;7.840269;60.4598!12;145.395351;0.962932;10.806892;3.139205!13;0.692268;10.059374;1.564066;147.988672!14;9.51174;7.890105;0;142.902535!15;118.052898;3.531078;27.492738;11.227666!16;14.304979;27.682412;31.513372;86.803617!17;17.672332;66.136874;11.206336;65.288838!18;58.639634;21.05798;18.928821;61.677945
|PWM=PO;A;C;G;T!1;79.334802;30.187075;11.671023;39.11148!2;75.758951;39.804695;33.95761;10.783124!3;49.264106;46.809618;10.776781;53.453875!4;1.624345;0.749118;0;157.930917!5;136.373394;4.4525;5.369937;14.108549!6;158.727167;0;0;1.577213!7;1.508366;7.678933;0.690944;150.426137!8;0.695534;11.381705;13.351513;134.875628!9;88.004985;21.998116;16.720946;33.580333!10;47.758261;39.506319;24.613038;48.426762!11;31.136202;60.868109;7.840269;60.4598!12;145.395351;0.962932;10.806892;3.139205!13;0.692268;10.059374;1.564066;147.988672!14;9.51174;7.890105;0;142.902535!15;118.052898;3.531078;27.492738;11.227666!16;14.304979;27.682412;31.513372;86.803617!17;17.672332;66.136874;11.206336;65.288838!18;58.639634;21.05798;18.928821;61.677945
|entrez_gene_id=
|entrez_gene_id=ALX1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ALX1.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ALX1.p2
|name=known201
|name=non-redundant201
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=ALX1.p2
|representative_motif_id=ALX1.p2
|representative_motif_name=  
|representative_motif_name=ALX1
|score=0.04904433568073474
|score=0.04904433568073474
|uniprot_entry_name=
|uniprot_entry_name=ALX1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant201
  • db :SWISSREGULON
  • Id :ALX1.p2
  • name :ALX1
  • score :0.04904433568073474
  • External refs:
EntrezGene:ALX1
UniProt:ALX1

  • Internal refs:
EntrezGene:ALX1


Motif matrix
POACGT
179.33480230.18707511.67102339.11148
275.75895139.80469533.9576110.783124
349.26410646.80961810.77678153.453875
41.6243450.7491180157.930917
5136.3733944.45255.36993714.108549
6158.727167001.577213
71.5083667.6789330.690944150.426137
80.69553411.38170513.351513134.875628
988.00498521.99811616.72094633.580333
1047.75826139.50631924.61303848.426762
1131.13620260.8681097.84026960.4598
12145.3953510.96293210.8068923.139205
130.69226810.0593741.564066147.988672
149.511747.8901050142.902535
15118.0528983.53107827.49273811.227666
1614.30497927.68241231.51337286.803617
1717.67233266.13687411.20633665.288838
1858.63963421.0579818.92882161.677945

Sub Motif Members