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NonredundantMotifs:80: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.326255419392637;0.256976141968317;0.231004731256006;0.18576370738304!2;0.145620716852147;0.315488674502416;0.266193010026159;0.272697598619279!3;0.138750375709297;0.396936861960182;0.20518531279273;0.259127449537791!4;0.534193719115474;0.121487574560679;0.0841784394711985;0.260140266852648!5;0.201823472676828;0.589398091826309;0.0866242413853179;0.122154194111544!6;0.0314280283473351;0.0232209417162063;0.0660482615565385;0.87930276837992!7;0.0223888814779034;0.889379236498264;0.0491650985364422;0.0390667834873908!8;0.0422522944665254;0.2959825836559;0.0852342756294989;0.576530846248076!9;0.0229050226216595;0.915186963772835;0.0215694718872452;0.0403385417182599!10;0.117305284418352;0.0610518753728793;0.716357750096008;0.105285090112761!11;0.205872863429051;0.113582221923096;0.609302718964143;0.0712421956837101!12;0.110208126831942;0.0849066775376228;0.274227634643182;0.530657560987254!13;0.233549707336184;0.385054915572194;0.150707969064777;0.230687408026845!14;0.333805656354403;0.136130920608261;0.311600157934336;0.218463265103!15;0.216422765895703;0.309360924410285;0.281144528245146;0.193071781448866
|PWM=P0;A;C;G;T!1;0.326255419392637;0.256976141968317;0.231004731256006;0.18576370738304!2;0.145620716852147;0.315488674502416;0.266193010026159;0.272697598619279!3;0.138750375709297;0.396936861960182;0.20518531279273;0.259127449537791!4;0.534193719115474;0.121487574560679;0.0841784394711985;0.260140266852648!5;0.201823472676828;0.589398091826309;0.0866242413853179;0.122154194111544!6;0.0314280283473351;0.0232209417162063;0.0660482615565385;0.87930276837992!7;0.0223888814779034;0.889379236498264;0.0491650985364422;0.0390667834873908!8;0.0422522944665254;0.2959825836559;0.0852342756294989;0.576530846248076!9;0.0229050226216595;0.915186963772835;0.0215694718872452;0.0403385417182599!10;0.117305284418352;0.0610518753728793;0.716357750096008;0.105285090112761!11;0.205872863429051;0.113582221923096;0.609302718964143;0.0712421956837101!12;0.110208126831942;0.0849066775376228;0.274227634643182;0.530657560987254!13;0.233549707336184;0.385054915572194;0.150707969064777;0.230687408026845!14;0.333805656354403;0.136130920608261;0.311600157934336;0.218463265103!15;0.216422765895703;0.309360924410285;0.281144528245146;0.193071781448866
|entrez_gene_id=3664
|entrez_gene_id=3664
|motif_cluster_2013_march_motif_members= /UNIPROBE:Irf5_secondary;SCI09~Irf6_secondary;SCI09~Irf4_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Irf4_secondary;SCI09~Irf6_secondary;SCI09~Irf5_secondary;SCI09
|name=known80
|name=non-redundant80
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Irf6_secondary
|representative_motif_id=Irf6_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant80
  • db :UNIPROBE
  • Id :Irf6_secondary
  • name :SCI09
  • score :1.5904861099164564
  • External refs:
EntrezGene:3664
UniProt:3664

  • Internal refs:
EntrezGene:3664


Motif matrix
P0ACGT
10.3262554193926370.2569761419683170.2310047312560060.18576370738304
20.1456207168521470.3154886745024160.2661930100261590.272697598619279
30.1387503757092970.3969368619601820.205185312792730.259127449537791
40.5341937191154740.1214875745606790.08417843947119850.260140266852648
50.2018234726768280.5893980918263090.08662424138531790.122154194111544
60.03142802834733510.02322094171620630.06604826155653850.87930276837992
70.02238888147790340.8893792364982640.04916509853644220.0390667834873908
80.04225229446652540.29598258365590.08523427562949890.576530846248076
90.02290502262165950.9151869637728350.02156947188724520.0403385417182599
100.1173052844183520.06105187537287930.7163577500960080.105285090112761
110.2058728634290510.1135822219230960.6093027189641430.0712421956837101
120.1102081268319420.08490667753762280.2742276346431820.530657560987254
130.2335497073361840.3850549155721940.1507079690647770.230687408026845
140.3338056563544030.1361309206082610.3116001579343360.218463265103
150.2164227658957030.3093609244102850.2811445282451460.193071781448866

Sub Motif Members

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