NonredundantMotifs:47: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM= | |PWM=PO;A;C;G;T!1;2719;163;3316;583!2;576;1919;3879;407!3;176;5168;108;1329!4;2048;4191;237;305!5;6224;129;75;353!6;7;20;7;6747!7;7;2468;20;4286!8;4991;787;244;759!9;3933;780;1627;441!10;1234;3235;1539;773 | ||
|entrez_gene_id= | |entrez_gene_id=79923 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX6-1,2.p2~HOX(A6,A7,B6,B7).p2 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ISL1_f1~NANOG_f1 /HOMER:NANOG_mES-Nanog-ChIP-Seq /JASPAR:MA0132.1;Pdx1 /SWISSREGULON:NKX6-1,2.p2~HOX(A6,A7,B6,B7).p2 /UNIPROBE:Hoxa3_secondary;SCI09 | ||
|name= | |name=non-redundant47 | ||
|representative_motif_db= | |representative_motif_db=HOMER | ||
|representative_motif_id= | |representative_motif_id=NANOG_mES-Nanog-ChIP-Seq | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.03222940009290264 | ||
|uniprot_entry_name= | |uniprot_entry_name=NANOG_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant47
- db :HOMER
- Id :NANOG_mES-Nanog-ChIP-Seq
- name :
- score :0.03222940009290264
- External refs:
- Internal refs:
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Sub Motif Members
