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NonredundantMotifs:35: Difference between revisions

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|PWM=P0;A;C;G;T!1;1.5705289672544112;4.386649874055439;17.275818639798516;10.01889168765744!2;2.92443324937028;1.9496221662468536;28.377833753148682;0.0!3;0.0;0.9748110831234268;31.302267002518953;0.9748110831234268!4;0.0;1.9496221662468536;31.302267002518953;0.0!5;9.964735516372807;0.9748110831234268;5.848866498740574;16.463476070528994!6;3.8992443324936934;0.0;25.45340050377838;3.8992443324936934!7;1.9496221662468536;7.7984886649874205;23.503778337531532;0.0!8;1.0831234256926963;2.92443324937028;8.881612090680115;20.362720403022724!9;7.1756926952141225;14.757556675063004;9.12531486146097;2.1933249370277124
|PWM=P0;A;C;G;T!1;1.5705289672544112;4.386649874055439;17.275818639798516;10.01889168765744!2;2.92443324937028;1.9496221662468536;28.377833753148682;0.0!3;0.0;0.9748110831234268;31.302267002518953;0.9748110831234268!4;0.0;1.9496221662468536;31.302267002518953;0.0!5;9.964735516372807;0.9748110831234268;5.848866498740574;16.463476070528994!6;3.8992443324936934;0.0;25.45340050377838;3.8992443324936934!7;1.9496221662468536;7.7984886649874205;23.503778337531532;0.0!8;1.0831234256926963;2.92443324937028;8.881612090680115;20.362720403022724!9;7.1756926952141225;14.757556675063004;9.12531486146097;2.1933249370277124
|entrez_gene_id=7545
|entrez_gene_id=7545
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GLI1..3.p2~ZIC1..3.p2 /HOMER:GLI3_GLI3-ChIP-Chip /UNIPROBE:Zbtb7b_secondary;SCI09 /HOCOMOCO:ZIC3_f1~ZIC1_f1~GLI1_f1~GLI2_f1~ZIC2_f1~GLI3_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZIC2_f1~ZIC1_f1~ZIC3_f1~GLI1_f1~GLI2_f1~GLI3_si /HOMER:GLI3_GLI3-ChIP-Chip /SWISSREGULON:ZIC1..3.p2~GLI1..3.p2 /UNIPROBE:Zbtb7b_secondary;SCI09
|name=known35
|name=non-redundant35
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=ZIC1_f1
|representative_motif_id=ZIC1_f1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant35
  • db :HOCOMOCO
  • Id :ZIC1_f1
  • name  :
  • score :1.7432568115672091
  • External refs:
EntrezGene:7545
UniProt:7545

  • Internal refs:
EntrezGene:7545


Motif matrix
P0ACGT
11.57052896725441124.38664987405543917.27581863979851610.01889168765744
22.924433249370281.949622166246853628.3778337531486820.0
30.00.974811083123426831.3022670025189530.9748110831234268
40.01.949622166246853631.3022670025189530.0
59.9647355163728070.97481108312342685.84886649874057416.463476070528994
63.89924433249369340.025.453400503778383.8992443324936934
71.94962216624685367.798488664987420523.5037783375315320.0
81.08312342569269632.924433249370288.88161209068011520.362720403022724
97.175692695214122514.7575566750630049.125314861460972.1933249370277124

Sub Motif Members