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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;122;120;154;71!2;107;80;164;117!3;64;173;149;82!4;83;229;65;93!5;134;232;47;57!6;308;28;89;48!7;36;8;387;43!8;19;18;420;18!9;33;41;91;310!10;4;394;53;24!11;398;13;27;37!12;58;250;107;60!13;63;276;53;83!14;64;258;97;56!15;32;19;8;416!16;21;22;426;6!17;305;106;31;33!18;10;436;12;17!19;59;353;2;61!20;26;165;22;262
|entrez_gene_id=2099
|entrez_gene_id=2099
|motif_cluster_2013_march_motif_members= /JASPAR:MA0258.1;ESR2~MA0112.2;ESR1~MA0066.1;PPARG /HOCOMOCO:ESR2_do~ESR1_do /SWISSREGULON:PPARG.p2~ESR1.p3 /HOMER:ESR1_MCF7-ERa-ChIP-Seq~NR1D1_BLRP(RAW)-Reverba-ChIP-Seq
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ESR1_do~ESR2_do /HOMER:NR1D1_BLRP(RAW)-Reverba-ChIP-Seq~ESR1_MCF7-ERa-ChIP-Seq /JASPAR:MA0258.1;ESR2~MA0112.2;ESR1~MA0066.1;PPARG /SWISSREGULON:PPARG.p2~ESR1.p3
|name=known38
|name=non-redundant38
|representative_motif_db=JASPAR
|representative_motif_db=JASPAR
|representative_motif_id=MA0112.2
|representative_motif_id=MA0112.2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant38
  • db :JASPAR
  • Id :MA0112.2
  • name :ESR1
  • score :0.6553463632180748
  • External refs:
EntrezGene:2099
UniProt:2099

  • Internal refs:
EntrezGene:2099


Motif matrix
P0ACGT
112212015471
210780164117
36417314982
4832296593
51342324757
6308288948
736838743
8191842018
9334191310
1043945324
11398132737
125825010760
13632765383
14642589756
1532198416
1621224266
173051063133
18104361217
1959353261
202616522262

Sub Motif Members