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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;13.541814946619212;6.481316725978635;8.467081850533816;2.5097864768683276!2;1.9857651245551615;2.9786476868327387;0.0;26.03558718861208!3;23.93950177935942;0.9928825622775808;3.088967971530249;2.9786476868327387!4;26.91814946619216;1.9857651245551615;0.0;2.096085409252668!5;0.0;2.9786476868327387;0.0;28.02135231316723!6;0.9928825622775808;7.060498220640578;3.971530249110329;18.975088967971534!7;15.003558718861205;0.0;15.996441281138793;0.0!8;11.032028469750877;7.943060498220627;11.032028469750877;0.9928825622775808!9;24.04982206405693;0.0;3.971530249110329;2.9786476868327387!10;3.088967971530249;0.0;0.9928825622775808;26.91814946619216!11;1.9857651245551615;0.9928825622775808;0.9928825622775808;27.028469750889673!12;25.704626334519553;1.7651245551601413;1.7651245551601413;1.7651245551601413
|entrez_gene_id=8092
|entrez_gene_id=8092
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ALX1_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ALX1_si
|name=known186
|name=non-redundant186
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=ALX1_si
|representative_motif_id=ALX1_si
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant186
  • db :HOCOMOCO
  • Id :ALX1_si
  • name  :
  • score :0.0736051562468925
  • External refs:
EntrezGene:8092
UniProt:8092

  • Internal refs:
EntrezGene:8092


Motif matrix
P0ACGT
113.5418149466192126.4813167259786358.4670818505338162.5097864768683276
21.98576512455516152.97864768683273870.026.03558718861208
323.939501779359420.99288256227758083.0889679715302492.9786476868327387
426.918149466192161.98576512455516150.02.096085409252668
50.02.97864768683273870.028.02135231316723
60.99288256227758087.0604982206405783.97153024911032918.975088967971534
715.0035587188612050.015.9964412811387930.0
811.0320284697508777.94306049822062711.0320284697508770.9928825622775808
924.049822064056930.03.9715302491103292.9786476868327387
103.0889679715302490.00.992882562277580826.91814946619216
111.98576512455516150.99288256227758080.992882562277580827.028469750889673
1225.7046263345195531.76512455516014131.76512455516014131.7651245551601413

Sub Motif Members