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NonredundantMotifs:184: Difference between revisions

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m (Autoedit moved page NonredundantMotifs:Motif184 to NonredundantMotifs:184 without leaving a redirect: NSchange)
 
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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;2.0918367346938798;4.642857142857141;1.1734693877551;2.0918367346938798!2;4.3877551020408205;0.0;3.7755102040816304;1.83673469387755!3;1.83673469387755;1.02040816326531;7.1428571428571495;0.0!4;0.0;1.83673469387755;8.163265306122451;0.0!5;5.6122448979591795;0.0;4.3877551020408205;0.0!6;7.1428571428571495;1.02040816326531;1.83673469387755;0.0!7;8.979591836734691;0.0;0.0;1.02040816326531!8;2.6530612244898;3.6734693877551;1.7346938775510201;1.93877551020408!9;3.6734693877551;1.7346938775510201;0.918367346938776;3.6734693877551!10;0.918367346938776;3.57142857142857;4.48979591836735;1.02040816326531!11;4.59183673469388;2.7551020408163303;0.918367346938776;1.7346938775510201!12;6.3265306122449;1.93877551020408;1.7346938775510201;0.0!13;1.02040816326531;8.979591836734691;0.0;0.0!14;8.163265306122451;0.0;0.0;1.83673469387755!15;0.0;2.7551020408163303;5.510204081632651;1.7346938775510201!16;1.93877551020408;5.30612244897959;2.7551020408163303;0.0!17;1.83673469387755;0.0;0.0;8.163265306122451!18;0.0;0.0;10.0;0.0!19;1.7346938775510201;3.6734693877551;0.0;4.59183673469388!20;0.0;5.20408163265306;4.79591836734694;0.0!21;2.5255102040816304;5.280612244897959;0.688775510204082;1.5051020408163298
|entrez_gene_id=256297
|entrez_gene_id=256297
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PTF1A_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PTF1A_f1
|name=known184
|name=non-redundant184
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=PTF1A_f1
|representative_motif_id=PTF1A_f1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant184
  • db :HOCOMOCO
  • Id :PTF1A_f1
  • name  :
  • score :0.30416999849236315
  • External refs:
EntrezGene:256297
UniProt:256297

  • Internal refs:
EntrezGene:256297


Motif matrix
P0ACGT
12.09183673469387984.6428571428571411.17346938775512.0918367346938798
24.38775510204082050.03.77551020408163041.83673469387755
31.836734693877551.020408163265317.14285714285714950.0
40.01.836734693877558.1632653061224510.0
55.61224489795917950.04.38775510204082050.0
67.14285714285714951.020408163265311.836734693877550.0
78.9795918367346910.00.01.02040816326531
82.65306122448983.67346938775511.73469387755102011.93877551020408
93.67346938775511.73469387755102010.9183673469387763.6734693877551
100.9183673469387763.571428571428574.489795918367351.02040816326531
114.591836734693882.75510204081633030.9183673469387761.7346938775510201
126.32653061224491.938775510204081.73469387755102010.0
131.020408163265318.9795918367346910.00.0
148.1632653061224510.00.01.83673469387755
150.02.75510204081633035.5102040816326511.7346938775510201
161.938775510204085.306122448979592.75510204081633030.0
171.836734693877550.00.08.163265306122451
180.00.010.00.0
191.73469387755102013.67346938775510.04.59183673469388
200.05.204081632653064.795918367346940.0
212.52551020408163045.2806122448979590.6887755102040821.5051020408163298

Sub Motif Members