NonredundantMotifs:153: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=6886
|motif_cluster_2013_march_motif_members= /HOMER:TAL1_motifB;HPC7-Scl-ChIP-Seq
|name=known153
|representative_motif_db=HOMER
|represent...") |
m (Autoedit moved page NonredundantMotifs:Motif153 to NonredundantMotifs:153 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;457;16;37;1!2;1;1;508;1!3;1;1;508;1!4;508;1;1;1!5;454;2;16;39!6;279;9;222;1!7;1;508;1;1!8;492;1;17;1!9;7;107;293;104!10;159;332;6;14!11;27;12;8;464!12;20;5;436;50 | |||
|entrez_gene_id=6886 | |entrez_gene_id=6886 | ||
|motif_cluster_2013_march_motif_members= /HOMER:TAL1_motifB;HPC7-Scl-ChIP-Seq | |motif_cluster_2013_march_motif_members= /HOMER:TAL1_motifB;HPC7-Scl-ChIP-Seq | ||
|name= | |name=non-redundant153 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=TAL1_motifB | |representative_motif_id=TAL1_motifB | ||
| Line 11: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:22, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant153
- db :HOMER
- Id :TAL1_motifB
- name :HPC7-Scl-ChIP-Seq
- score :0.11962485185601689
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
