NonredundantMotifs:123: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TLX2.p2~MSX1,2.p2
|name=known123
|representative_motif_db=SWISSREGULON
|representat...") |
m (Autoedit moved page NonredundantMotifs:Motif123 to NonredundantMotifs:123 without leaving a redirect: NSchange) |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;1.344309;25.356356;0.132901;3.664845!2;8.241792;6.841129;3.24168;12.17381!3;1.861585;5.693302;18.743901;4.199623!4;0.7003;2.252222;0.22213;27.323759!5;24.748232;0.14443;2.095333;3.510416!6;23.760977;1.927123;0;4.810311!7;9.227649;3.049867;3.302279;14.918616!8;0;0.478109;0;30.020302!9;1.772144;0.169098;27.579629;0.97754 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON: | |entrez_gene_id=MSX1,2 | ||
|name= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:MSX1,2.p2~TLX2.p2 | ||
|name=non-redundant123 | |||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=MSX1,2.p2 | |representative_motif_id=MSX1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=MSX1,2 | ||
|score=0.047883748605647904 | |score=0.047883748605647904 | ||
|uniprot_entry_name= | |uniprot_entry_name=MSX1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant123
- db :SWISSREGULON
- Id :MSX1,2.p2
- name :MSX1,2
- score :0.047883748605647904
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
