NonredundantMotifs:48: Difference between revisions
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|entrez_gene_id=6908
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXL1.p2~TBP.p2 /JASPAR:MA0033.1;FOXL1~MA0108.2;TBP /HOCOMOCO:TBP_f1 /UNIPROBE:...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;61;145;152;31!2;16;46;18;309!3;352;0;2;35!4;3;10;2;374!5;354;0;5;30!6;268;0;0;121!7;360;3;20;6!8;222;2;44;121!9;155;44;157;33!10;56;135;150;48!11;83;147;128;31!12;82;127;128;52!13;82;118;128;61!14;68;107;139;75!15;77;101;140;71 | |||
|entrez_gene_id=6908 | |entrez_gene_id=6908 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:TBP_f1 /JASPAR:MA0033.1;FOXL1~MA0108.2;TBP /SWISSREGULON:FOXL1.p2~TBP.p2 /UNIPROBE:Zfp128_secondary;SCI09~Six6_secondary;SCI09 | ||
|name= | |name=non-redundant48 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
|representative_motif_id=MA0108.2 | |representative_motif_id=MA0108.2 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant48
- db :JASPAR
- Id :MA0108.2
- name :TBP
- score :0.12305722137652626
- External refs:
- Internal refs:
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Sub Motif Members
