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MCL coexpression mm9:603: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_uberon=UBERON:0007100!2.35e-29!18;UBERON:0000948!2.35e-29!18;UBERON:0005498!2.35e-29!18;UBERON:0004140!2.35e-29!18;UBERON:0009881!2.35e-29!18;UBERON:0004141!2.35e-29!18;UBERON:0003084!2.35e-29!18;UBERON:0007005!2.35e-29!18;UBERON:0004139!2.35e-29!18;UBERON:0004291!2.35e-29!18;UBERON:0004535!4.18e-23!23;UBERON:0001009!4.18e-23!23;UBERON:0004872!2.90e-16!33;UBERON:0003103!1.38e-12!43;UBERON:0003914!1.50e-11!47
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.409645,0.245304,0.303186,0.474017,0.315748,0.396495,1.55893,0.320069,0.0641678,0.357058,0.385627,0.0909495,0.407615,0.504927,0,0.587245,0.459418,0.988053,0.33293,1.15785,2.40193,0.406794,0.155356,0.251585,0.432737,0.0768517,0.334131,0.558665,0.198166,0.321757,0.683831,0.14899,0.866746,0.169391,0.0172637,0.142225,0.382372,0.79515,0.107198,1.45879,0.870859,0.990451,0.170547,0.283915,0.293566,0.512146,0.34807,1.19261,0.19345,0.570705,0.457464,0.419161,0.82076,0.837732,0.414119,0.200484,0.37415,0.250759,0.412262,0.664611,0.46618,0.104381,0.560059,0.424276,0.598412,0.970969,1.3158,0.660133,1.17005,0.229771,0.0945081,0.102623,0.870406,0.0680008,0.222652,0.866433,0.50152,0.648171,0.218647,0.651601,0.60374,0.464847,0.293128,0.758319,0.0325399,0.0395547,0.43877,0.516731,1.47691,1.03946,0.763136,0.696137,0.16091,0.12392,0.11194,0.299765,0.698838,0.512384,1.04626,0.438441,0.683562,0.803823,0.571268,0.57027,0.3259,0.627019,0.344504,0.222586,0.216685,0.261228,0.805555,0.626352,0.361667,1.04639,0.463309,0.136172,0.306448,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,0.689622,0.969481,0.163147,0.787341,0.296885,0.940498,0.426575,1.06766,0.092963,0.274293,0.327523,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,2.13017,0.477267,0.0549354,0.0825345,0.822286,0.370892,1.08967,0.901933,0.458393,0.52735,0.265096,0.274055,1.02862,0.757491,0.652135,0.25933,1.37904,2.82128,0.436256,0.384198,1.0612
|tfbs_overrepresentation_jaspar=MA0003.1;0.00810215,MA0004.1;0.303605,MA0006.1;0.16569,MA0007.1;0.790701,MA0009.1;0.709264,MA0014.1;0.00213944,MA0017.1;0.546298,MA0019.1;0.535691,MA0024.1;0.667197,MA0025.1;0.936082,MA0027.1;2.34178,MA0028.1;0.173587,MA0029.1;0.64639,MA0030.1;0.65267,MA0031.1;0.618697,MA0038.1;0.432665,MA0040.1;0.721328,MA0041.1;1.25077,MA0042.1;1.20982,MA0043.1;0.802848,MA0046.1;0.743934,MA0048.1;0.680396,MA0050.1;1.60735,MA0051.1;1.96346,MA0052.1;0.729105,MA0055.1;0.0370218,MA0056.1;0,MA0057.1;0.0386961,MA0058.1;0.223242,MA0059.1;0.658541,MA0060.1;0.351437,MA0061.1;0.40468,MA0063.1;0,MA0066.1;1.90174,MA0067.1;1.04514,MA0068.1;0.0405002,MA0069.1;0.729433,MA0070.1;0.720077,MA0071.1;0.894189,MA0072.1;0.711905,MA0073.1;0.000195623,MA0074.1;1.01196,MA0076.1;0.200996,MA0077.1;0.691048,MA0078.1;0.471303,MA0081.1;0.252371,MA0083.1;1.88104,MA0084.1;1.3693,MA0087.1;0.760279,MA0088.1;0.0227266,MA0089.1;0,MA0090.1;0.753315,MA0091.1;0.315003,MA0092.1;0.274547,MA0093.1;0.179936,MA0095.1;0,MA0098.1;0,MA0100.1;0.989129,MA0101.1;0.240622,MA0103.1;0.566591,MA0105.1;0.0633795,MA0106.1;0.478503,MA0107.1;0.189625,MA0108.2;0.557195,MA0109.1;0,MA0111.1;0.286331,MA0113.1;1.14743,MA0114.1;0.400482,MA0115.1;0.805567,MA0116.1;0.165534,MA0117.1;0.774259,MA0119.1;1.25662,MA0122.1;0.793507,MA0124.1;0.992825,MA0125.1;0.920215,MA0130.1;0,MA0131.1;0.531427,MA0132.1;0,MA0133.1;0,MA0135.1;0.838263,MA0136.1;0.408073,MA0139.1;0.0883913,MA0140.1;0.379562,MA0141.1;0.603844,MA0142.1;0.604892,MA0143.1;0.467531,MA0144.1;0.807435,MA0145.1;0.494714,MA0146.1;1.9229,MA0147.1;0.428193,MA0148.1;0.851609,MA0149.1;0.245177,MA0062.2;0.0662974,MA0035.2;0.998181,MA0039.2;0.000528196,MA0138.2;0.523978,MA0002.2;0.302282,MA0137.2;0.207733,MA0104.2;0.326825,MA0047.2;0.431964,MA0112.2;0.494696,MA0065.2;0.265926,MA0150.1;0.790482,MA0151.1;0,MA0152.1;0.432062,MA0153.1;0.854464,MA0154.1;0.16541,MA0155.1;0.127763,MA0156.1;0.200311,MA0157.1;0.574484,MA0158.1;0,MA0159.1;0.446593,MA0160.1;0.320315,MA0161.1;0,MA0162.1;0.0257461,MA0163.1;0.0220786,MA0164.1;1.052,MA0080.2;0.190316,MA0018.2;0.417217,MA0099.2;0.518072,MA0079.2;0.000126373,MA0102.2;1.42135,MA0258.1;1.23793,MA0259.1;0.408856,MA0442.1;0
}}

Latest revision as of 15:35, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:65481264..65481266,+p@chr11:65481264..65481266
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Mm9::chr12:112225314..112225320,-p@chr12:112225314..112225320
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Mm9::chr13:12226145..12226150,+p@chr13:12226145..12226150
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Mm9::chr17:31903886..31903890,-p@chr17:31903886..31903890
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Mm9::chr1:193123428..193123438,+p@chr1:193123428..193123438
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Mm9::chr1:195158472..195158479,+p@chr1:195158472..195158479
+
Mm9::chr2:178229047..178229087,+p@chr2:178229047..178229087
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Mm9::chr5:51958382..51958387,-p@chr5:51958382..51958387
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Mm9::chr5:51958956..51958971,-p3@Ppargc1a
Mm9::chr7:29616394..29616408,+p13@Ech1
Mm9::chr8:11175221..11175225,+p@chr8:11175221..11175225
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Mm9::chr9:71437009..71437011,-p@chr9:71437009..71437011
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00810215
MA0004.10.303605
MA0006.10.16569
MA0007.10.790701
MA0009.10.709264
MA0014.10.00213944
MA0017.10.546298
MA0019.10.535691
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.173587
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.10.432665
MA0040.10.721328
MA0041.11.25077
MA0042.11.20982
MA0043.10.802848
MA0046.10.743934
MA0048.10.680396
MA0050.11.60735
MA0051.11.96346
MA0052.10.729105
MA0055.10.0370218
MA0056.10
MA0057.10.0386961
MA0058.10.223242
MA0059.10.658541
MA0060.10.351437
MA0061.10.40468
MA0063.10
MA0066.11.90174
MA0067.11.04514
MA0068.10.0405002
MA0069.10.729433
MA0070.10.720077
MA0071.10.894189
MA0072.10.711905
MA0073.10.000195623
MA0074.11.01196
MA0076.10.200996
MA0077.10.691048
MA0078.10.471303
MA0081.10.252371
MA0083.11.88104
MA0084.11.3693
MA0087.10.760279
MA0088.10.0227266
MA0089.10
MA0090.10.753315
MA0091.10.315003
MA0092.10.274547
MA0093.10.179936
MA0095.10
MA0098.10
MA0100.10.989129
MA0101.10.240622
MA0103.10.566591
MA0105.10.0633795
MA0106.10.478503
MA0107.10.189625
MA0108.20.557195
MA0109.10
MA0111.10.286331
MA0113.11.14743
MA0114.10.400482
MA0115.10.805567
MA0116.10.165534
MA0117.10.774259
MA0119.11.25662
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.10.0883913
MA0140.10.379562
MA0141.10.603844
MA0142.10.604892
MA0143.10.467531
MA0144.10.807435
MA0145.10.494714
MA0146.11.9229
MA0147.10.428193
MA0148.10.851609
MA0149.10.245177
MA0062.20.0662974
MA0035.20.998181
MA0039.20.000528196
MA0138.20.523978
MA0002.20.302282
MA0137.20.207733
MA0104.20.326825
MA0047.20.431964
MA0112.20.494696
MA0065.20.265926
MA0150.10.790482
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.16541
MA0155.10.127763
MA0156.10.200311
MA0157.10.574484
MA0158.10
MA0159.10.446593
MA0160.10.320315
MA0161.10
MA0162.10.0257461
MA0163.10.0220786
MA0164.11.052
MA0080.20.190316
MA0018.20.417217
MA0099.20.518072
MA0079.20.000126373
MA0102.21.42135
MA0258.11.23793
MA0259.10.408856
MA0442.10
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