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MCL coexpression mm9:125: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_uberon=
|tfbs_overrepresentation_for_novel_motifs=0.0235493,0.000188946,0.0161363,0.718483,0.13202,1.36364,0.00722556,1.07406,0.131683,0.000106667,0.0753863,0.595756,0.00935178,0.0427779,0.693703,0,0.0415391,0.404269,0.26259,0.0672086,0.46815,0.0142114,0.0424299,1.43712,0.105465,0.0110259,0.158866,0.135511,0.00489354,0.132983,0.0507218,0.928339,0.0138409,0.299266,0.000516571,0.024787,0.000180062,0.00603147,0.507964,0.00806627,0.124532,0.0163823,0.0142745,1.65797,4.20194e-05,0.0350753,0.101464,0.0685648,0.355294,0.149516,0.614034,0.17638,0.0154844,0.42381,0.876514,0.0455968,0.744444,0.0299758,0.0305104,0.0447807,0.0665417,0.0155671,0.33375,0.137792,0.0100389,0.386888,0.225275,0.485211,0.499747,0.367785,0.000352685,0.1232,3.15687e-05,0.491913,6.3484e-05,0.0881399,0.505499,0.0215484,0.218976,1.12711,0.189361,0.0463118,0.605081,0.0964401,0.10554,3.24159e-13,1.07526,0.010305,0.10469,0.624063,0.271518,0.107791,0.570392,0.813762,0.0151828,0.0781897,0.428344,0.273344,0.470039,0.0294576,0.821871,0.0736732,0.401415,0.147113,0.146271,0.0533218,0.0535634,0.149732,0.0688186,0.000246311,3.4769,0.803449,0.065495,0.0790286,0.276376,0.195008,3.72452e-08,0.0122404,0.162013,0.338605,0.16675,0.85378,1.10218,0.442882,0.314731,0.0619116,0.427149,0.0760355,0.224307,0.149499,2.45741,0.0105275,1.12109,2.27255,0.792449,0.0527972,0.575584,0.84642,0.257556,0.962418,0.596154,0.646886,0.323711,0.267808,0.141155,0.125754,0.253596,0.924926,1.35852,0.0064633,0.0959212,9.82997e-11,1.36011,0.0253961,0.284958,0.182146,0.17752,0.0626591,3.0969,0.00712417,0.263991,0.105155,0.836211,0.055164,0.0345731,0.272173,0.0533175,0.374887,2.05912e-07
|tfbs_overrepresentation_jaspar=MA0003.1;3.37515e-16,MA0004.1;0.0979553,MA0006.1;0.00233619,MA0007.1;0.00951187,MA0009.1;1.00426,MA0014.1;8.77601e-12,MA0017.1;0.836016,MA0019.1;1.21325,MA0024.1;0.0674918,MA0025.1;0.203016,MA0027.1;1.4456,MA0028.1;0.00298519,MA0029.1;0.217161,MA0030.1;0.485528,MA0031.1;1.13848,MA0038.1;0.774569,MA0040.1;2.11415,MA0041.1;0.806728,MA0042.1;0.243104,MA0043.1;0.127233,MA0046.1;0.669035,MA0048.1;0.00453125,MA0050.1;1.53437,MA0051.1;1.13514,MA0052.1;0.637872,MA0055.1;0.000329916,MA0056.1;0,MA0057.1;0.00259254,MA0058.1;0.133702,MA0059.1;0.15339,MA0060.1;0.0392344,MA0061.1;0.00236086,MA0063.1;0,MA0066.1;0.0494479,MA0067.1;0.275496,MA0068.1;0.00136018,MA0069.1;0.308633,MA0070.1;0.619141,MA0071.1;2.30486,MA0072.1;1.01224,MA0073.1;1.50888e-06,MA0074.1;0.390201,MA0076.1;0.00628782,MA0077.1;0.560209,MA0078.1;0.932314,MA0081.1;0.474609,MA0083.1;0.399133,MA0084.1;2.2612,MA0087.1;2.99068,MA0088.1;6.59818e-06,MA0089.1;0,MA0090.1;0.247535,MA0091.1;0.214817,MA0092.1;0.0682993,MA0093.1;0.11955,MA0095.1;0,MA0098.1;0,MA0100.1;0.0941845,MA0101.1;0.00366496,MA0103.1;0.245515,MA0105.1;0.00177408,MA0106.1;0.203056,MA0107.1;0.00470059,MA0108.2;0.579449,MA0109.1;0,MA0111.1;0.0796023,MA0113.1;0.567037,MA0114.1;1.50588,MA0115.1;0.4037,MA0116.1;0.0914045,MA0117.1;0.11308,MA0119.1;1.33838,MA0122.1;0.387996,MA0124.1;1.25123,MA0125.1;1.07159,MA0130.1;0,MA0131.1;0.0276189,MA0132.1;0,MA0133.1;0,MA0135.1;0.447413,MA0136.1;0.252144,MA0139.1;0.000298497,MA0140.1;0.833675,MA0141.1;0.442243,MA0142.1;0.39821,MA0143.1;0.369513,MA0144.1;1.07353,MA0145.1;4.76488e-05,MA0146.1;1.41798e-10,MA0147.1;0.023857,MA0148.1;1.37874,MA0149.1;0.000521089,MA0062.2;0.000229203,MA0035.2;0.37383,MA0039.2;4.06651e-07,MA0138.2;0.109897,MA0002.2;0.00362423,MA0137.2;0.79891,MA0104.2;0.00201323,MA0047.2;1.08978,MA0112.2;4.76323e-05,MA0065.2;0.369092,MA0150.1;0.895154,MA0151.1;0,MA0152.1;0.29716,MA0153.1;0.154746,MA0154.1;0.154856,MA0155.1;0.000985768,MA0156.1;0.0939164,MA0157.1;0.346223,MA0158.1;0,MA0159.1;0.260959,MA0160.1;1.08458,MA0161.1;0,MA0162.1;3.97303e-14,MA0163.1;1.00102e-11,MA0164.1;0.043113,MA0080.2;0.87313,MA0018.2;0.046978,MA0099.2;0.777618,MA0079.2;0,MA0102.2;0.57529,MA0258.1;0.0272297,MA0259.1;0.000630164,MA0442.1;0
}}

Latest revision as of 14:44, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:43700086..43700119,-p@chr10:43700086..43700119
-
Mm9::chr10:88251126..88251133,-p@chr10:88251126..88251133
-
Mm9::chr11:3404996..3405006,-p7@Inpp5j
Mm9::chr11:58203731..58203759,-p@chr11:58203731..58203759
-
Mm9::chr11:78926143..78926150,-p@chr11:78926143..78926150
-
Mm9::chr11:96125582..96125598,+p@chr11:96125582..96125598
+
Mm9::chr12:85740563..85740574,-p@chr12:85740563..85740574
-
Mm9::chr13:104711867..104711887,-p@chr13:104711867..104711887
-
Mm9::chr13:44572420..44572429,-p@chr13:44572420..44572429
-
Mm9::chr13:5154433..5154438,+p@chr13:5154433..5154438
+
Mm9::chr15:63743842..63743852,-p1@Gsdmc4
p2@Gsdmc
Mm9::chr17:29398913..29398926,-p@chr17:29398913..29398926
-
Mm9::chr17:67695817..67695823,-p@chr17:67695817..67695823
-
Mm9::chr18:60659073..60659084,-p@chr18:60659073..60659084
-
Mm9::chr18:61356200..61356211,-p@chr18:61356200..61356211
-
Mm9::chr19:18850662..18850672,+p@chr19:18850662..18850672
+
Mm9::chr19:39081404..39081413,+p2@Cyp2c55
Mm9::chr19:39081438..39081462,+p1@Cyp2c55
Mm9::chr19:39081541..39081583,+p@chr19:39081541..39081583
+
Mm9::chr19:39081627..39081638,+p@chr19:39081627..39081638
+
Mm9::chr19:39086179..39086184,+p@chr19:39086179..39086184
+
Mm9::chr19:39086212..39086217,+p@chr19:39086212..39086217
+
Mm9::chr19:39086251..39086294,+p@chr19:39086251..39086294
+
Mm9::chr19:39091240..39091251,+p@chr19:39091240..39091251
+
Mm9::chr19:39091403..39091420,+p@chr19:39091403..39091420
+
Mm9::chr19:39092959..39092988,+p@chr19:39092959..39092988
+
Mm9::chr19:39093224..39093232,+p@chr19:39093224..39093232
+
Mm9::chr19:39093293..39093300,+p@chr19:39093293..39093300
+
Mm9::chr19:39093918..39093956,+p@chr19:39093918..39093956
+
Mm9::chr19:39096538..39096547,+p@chr19:39096538..39096547
+
Mm9::chr19:39096594..39096614,+p@chr19:39096594..39096614
+
Mm9::chr19:39097224..39097232,+p@chr19:39097224..39097232
+
Mm9::chr19:39097256..39097263,+p@chr19:39097256..39097263
+
Mm9::chr19:39098040..39098051,+p@chr19:39098040..39098051
+
Mm9::chr19:39098403..39098417,+p@chr19:39098403..39098417
+
Mm9::chr19:39098435..39098442,+p@chr19:39098435..39098442
+
Mm9::chr19:39098447..39098459,+p@chr19:39098447..39098459
+
Mm9::chr19:39098553..39098561,+p@chr19:39098553..39098561
+
Mm9::chr19:39100478..39100487,+p@chr19:39100478..39100487
+
Mm9::chr19:39104722..39104737,+p@chr19:39104722..39104737
+
Mm9::chr19:39104807..39104809,+p@chr19:39104807..39104809
+
Mm9::chr19:39105749..39105760,+p@chr19:39105749..39105760
+
Mm9::chr19:39105791..39105796,+p@chr19:39105791..39105796
+
Mm9::chr19:39109805..39109814,+p@chr19:39109805..39109814
+
Mm9::chr19:39110437..39110441,+p@chr19:39110437..39110441
+
Mm9::chr19:39110970..39110981,+p@chr19:39110970..39110981
+
Mm9::chr1:187255810..187255825,+p@chr1:187255810..187255825
+
Mm9::chr1:187255827..187255839,+p@chr1:187255827..187255839
+
Mm9::chr1:57037962..57037971,-p@chr1:57037962..57037971
-
Mm9::chr1:71461377..71461389,-p6@Abca12
Mm9::chr1:95892833..95892857,+p@chr1:95892833..95892857
+
Mm9::chr1:95913485..95913489,+p@chr1:95913485..95913489
+
Mm9::chr2:152793671..152793688,+p@chr2:152793671..152793688
+
Mm9::chr2:26771210..26771218,-p6@Surf1
Mm9::chr3:128546696..128546699,+p@chr3:128546696..128546699
+
Mm9::chr3:128902434..128902444,+p13@Pitx2
Mm9::chr3:128905443..128905454,+p@chr3:128905443..128905454
+
Mm9::chr3:14766490..14766491,-p@chr3:14766490..14766491
-
Mm9::chr3:14766534..14766542,+p@chr3:14766534..14766542
+
Mm9::chr3:14766543..14766593,+p@chr3:14766543..14766593
+
Mm9::chr3:14767412..14767418,+p@chr3:14767412..14767418
+
Mm9::chr3:14767512..14767522,-p@chr3:14767512..14767522
-
Mm9::chr3:14767530..14767536,+p@chr3:14767530..14767536
+
Mm9::chr3:14767551..14767562,-p@chr3:14767551..14767562
-
Mm9::chr3:14770163..14770190,+p@chr3:14770163..14770190
+
Mm9::chr3:14770206..14770247,-p@chr3:14770206..14770247
-
Mm9::chr3:52513113..52513115,+p@chr3:52513113..52513115
+
Mm9::chr3:8022828..8022857,-p@chr3:8022828..8022857
-
Mm9::chr3:98083853..98083875,+p2@Hmgcs2
Mm9::chr3:98083953..98083959,+p3@Hmgcs2
Mm9::chr4:12488251..12488254,+p@chr4:12488251..12488254
+
Mm9::chr4:12489966..12489968,-p@chr4:12489966..12489968
-
Mm9::chr6:41586388..41586408,-p1@Trpv6
Mm9::chr6:50094686..50094697,+p@chr6:50094686..50094697
+
Mm9::chr6:50094726..50094747,+p@chr6:50094726..50094747
+
Mm9::chr6:54546708..54546716,+p@chr6:54546708..54546716
+
Mm9::chr6:71960157..71960160,-p@chr6:71960157..71960160
-
Mm9::chr6:71992511..71992527,-p@chr6:71992511..71992527
-
Mm9::chr6:71992531..71992534,-p@chr6:71992531..71992534
-
Mm9::chr6:72586369..72586372,+p7@uc009cjb.1
Mm9::chr7:131772635..131772639,-p@chr7:131772635..131772639
-
Mm9::chr7:25374787..25374794,-p@chr7:25374787..25374794
-
Mm9::chr7:26248466..26248489,+p@chr7:26248466..26248489
+
Mm9::chr7:26248695..26248717,+p@chr7:26248695..26248717
+
Mm9::chr7:26251364..26251375,-p@chr7:26251364..26251375
-
Mm9::chr7:26256841..26256847,-p@chr7:26256841..26256847
-
Mm9::chr7:26259766..26259792,+p@chr7:26259766..26259792
+
Mm9::chr7:26261404..26261421,+p@chr7:26261404..26261421
+
Mm9::chr7:26261425..26261445,-p@chr7:26261425..26261445
-
Mm9::chr7:26261502..26261519,-p@chr7:26261502..26261519
-
Mm9::chr7:26261585..26261609,-p@chr7:26261585..26261609
-
Mm9::chr7:26261661..26261673,-p@chr7:26261661..26261673
-
Mm9::chr7:36337965..36337969,-p@chr7:36337965..36337969
-
Mm9::chr8:120262966..120262967,+p@chr8:120262966..120262967
+
Mm9::chr9:43065486..43065494,+p@chr9:43065486..43065494
+
Mm9::chrX:70853797..70853800,+p@chrX:70853797..70853800
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.13.37515e-16
MA0004.10.0979553
MA0006.10.00233619
MA0007.10.00951187
MA0009.11.00426
MA0014.18.77601e-12
MA0017.10.836016
MA0019.11.21325
MA0024.10.0674918
MA0025.10.203016
MA0027.11.4456
MA0028.10.00298519
MA0029.10.217161
MA0030.10.485528
MA0031.11.13848
MA0038.10.774569
MA0040.12.11415
MA0041.10.806728
MA0042.10.243104
MA0043.10.127233
MA0046.10.669035
MA0048.10.00453125
MA0050.11.53437
MA0051.11.13514
MA0052.10.637872
MA0055.10.000329916
MA0056.10
MA0057.10.00259254
MA0058.10.133702
MA0059.10.15339
MA0060.10.0392344
MA0061.10.00236086
MA0063.10
MA0066.10.0494479
MA0067.10.275496
MA0068.10.00136018
MA0069.10.308633
MA0070.10.619141
MA0071.12.30486
MA0072.11.01224
MA0073.11.50888e-06
MA0074.10.390201
MA0076.10.00628782
MA0077.10.560209
MA0078.10.932314
MA0081.10.474609
MA0083.10.399133
MA0084.12.2612
MA0087.12.99068
MA0088.16.59818e-06
MA0089.10
MA0090.10.247535
MA0091.10.214817
MA0092.10.0682993
MA0093.10.11955
MA0095.10
MA0098.10
MA0100.10.0941845
MA0101.10.00366496
MA0103.10.245515
MA0105.10.00177408
MA0106.10.203056
MA0107.10.00470059
MA0108.20.579449
MA0109.10
MA0111.10.0796023
MA0113.10.567037
MA0114.11.50588
MA0115.10.4037
MA0116.10.0914045
MA0117.10.11308
MA0119.11.33838
MA0122.10.387996
MA0124.11.25123
MA0125.11.07159
MA0130.10
MA0131.10.0276189
MA0132.10
MA0133.10
MA0135.10.447413
MA0136.10.252144
MA0139.10.000298497
MA0140.10.833675
MA0141.10.442243
MA0142.10.39821
MA0143.10.369513
MA0144.11.07353
MA0145.14.76488e-05
MA0146.11.41798e-10
MA0147.10.023857
MA0148.11.37874
MA0149.10.000521089
MA0062.20.000229203
MA0035.20.37383
MA0039.24.06651e-07
MA0138.20.109897
MA0002.20.00362423
MA0137.20.79891
MA0104.20.00201323
MA0047.21.08978
MA0112.24.76323e-05
MA0065.20.369092
MA0150.10.895154
MA0151.10
MA0152.10.29716
MA0153.10.154746
MA0154.10.154856
MA0155.10.000985768
MA0156.10.0939164
MA0157.10.346223
MA0158.10
MA0159.10.260959
MA0160.11.08458
MA0161.10
MA0162.13.97303e-14
MA0163.11.00102e-11
MA0164.10.043113
MA0080.20.87313
MA0018.20.046978
MA0099.20.777618
MA0079.20
MA0102.20.57529
MA0258.10.0272297
MA0259.10.000630164
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:125&oldid=3072124"