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MCL coexpression mm9:105: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!1.79e-38!15;UBERON:0003350!2.13e-32!9;UBERON:0004808!2.13e-32!9;UBERON:0001277!2.13e-32!9;UBERON:0001242!8.65e-29!13;UBERON:0000060!8.65e-29!13;UBERON:0001262!8.65e-29!13;UBERON:0004786!8.65e-29!13;UBERON:0000485!2.00e-26!11;UBERON:0004923!1.16e-23!24;UBERON:0000160!7.77e-22!31;UBERON:0005409!5.77e-14!47;UBERON:0001962!1.88e-12!2;UBERON:0001961!1.88e-12!2;UBERON:0001744!1.88e-12!2;UBERON:0002465!1.33e-08!3;UBERON:0003199!3.67e-07!1;UBERON:0001007!5.03e-07!116;UBERON:0001555!5.03e-07!116;UBERON:0007026!5.03e-07!116;UBERON:0004119!7.09e-07!118;UBERON:0000925!7.09e-07!118;UBERON:0006595!7.09e-07!118
|tfbs_overrepresentation_for_novel_motifs=0.150911,0.15756,0.563263,0.52167,0.312542,0.267293,0.105038,0.31416,0.368911,0.0186159,0.0677002,0.701473,0.00413387,0.117306,0.662066,0,0.216071,0.197097,0.0844228,0.893909,0.540587,0.298737,0.116374,0.543127,0.0656378,0.147824,1.68332,0.107819,0.282921,0.385539,0.824507,0.356737,0.126764,0.306954,0.194713,0.0907006,0.0195001,0.179654,0.689012,0.0599957,0.209122,0.180793,0.963874,0.395586,0.0371848,0.0271743,0.13054,0.0605279,0.366379,0.892995,0.38031,0.181598,0.332598,0.289948,1.06728,0.124835,0.145576,0.0827033,0.29311,0.122658,0.326213,0.0894144,1.82025,0.0150103,0.137114,0.0924658,0.929003,0.391956,0.581455,0.283611,0.00729897,0.347812,0.000575491,0.347909,0.00184525,0.761727,0.306503,0.250638,0.301067,1.9496,1.18562,0.0958697,0.192388,0.464603,0.0622778,9.79036e-06,0.000318641,0.18107,0.0489445,0.523415,0.574717,0.228503,0.165711,0.590477,0.0042041,1.34011,0.390358,0.168051,0.269339,0.0468201,0.878562,0.155031,0.572005,0.63086,0.194813,0.0163055,0.0264987,0.218486,0.0746173,0.0336594,0.0370966,0.575394,0.741598,0.146392,0.202069,0.51683,0.000169986,0.0116577,0.0193659,0.223904,0.354315,0.320304,1.24676,0.24921,0.235908,0.306402,0.365403,0.366164,0.157232,0.111327,0.540122,0.33951,0.436848,1.90635,1.15811,1.02517,0.165855,0.452362,1.64589,0.851979,0.496772,0.160612,0.164749,0.373182,0.0722277,0.0454089,0.274052,0.815205,0.564577,0.0154609,0.142524,6.51917e-08,0.608509,0.0806655,0.260702,0.122111,0.182939,0.444171,0.506283,0.00614166,0.191279,0.0619949,0.129935,0.221501,0.3607,0.247073,0.0367353,0.483674,0.00850884
|tfbs_overrepresentation_jaspar=MA0003.1;1.52239e-10,MA0004.1;0.235095,MA0006.1;0.11772,MA0007.1;0.318452,MA0009.1;1.08817,MA0014.1;4.95281e-05,MA0017.1;0.260739,MA0019.1;0.528052,MA0024.1;0.33025,MA0025.1;1.37271,MA0027.1;1.32996,MA0028.1;0.00420746,MA0029.1;0.548345,MA0030.1;0.563384,MA0031.1;0.77834,MA0038.1;1.57904,MA0040.1;0.0503513,MA0041.1;0.100113,MA0042.1;0.0834038,MA0043.1;0.570101,MA0046.1;3.48986,MA0048.1;0.0719073,MA0050.1;0.0196133,MA0051.1;0.0226399,MA0052.1;0.0527376,MA0055.1;1.05077,MA0056.1;0,MA0057.1;0.131245,MA0058.1;0.20983,MA0059.1;1.30951,MA0060.1;0.378103,MA0061.1;0.044485,MA0063.1;0,MA0066.1;1.17363,MA0067.1;0.583019,MA0068.1;0.196635,MA0069.1;0.195701,MA0070.1;0.187027,MA0071.1;0.685932,MA0072.1;0.179607,MA0073.1;0.191394,MA0074.1;0.0404093,MA0076.1;0.00329237,MA0077.1;0.368502,MA0078.1;0.361458,MA0081.1;0.0665135,MA0083.1;3.24689,MA0084.1;0.434425,MA0087.1;0.489284,MA0088.1;0.0152809,MA0089.1;0,MA0090.1;0.394823,MA0091.1;0.159294,MA0092.1;0.555305,MA0093.1;0.235532,MA0095.1;0,MA0098.1;0,MA0100.1;0.0879289,MA0101.1;0.0541451,MA0103.1;1.86192,MA0105.1;0.0109776,MA0106.1;0.0340705,MA0107.1;0.0701172,MA0108.2;2.5595,MA0109.1;0,MA0111.1;0.192807,MA0113.1;0.317913,MA0114.1;0.85486,MA0115.1;1.45036,MA0116.1;0.0393817,MA0117.1;0.239849,MA0119.1;0.26844,MA0122.1;0.260074,MA0124.1;0.508102,MA0125.1;0.814756,MA0130.1;0,MA0131.1;0.0113477,MA0132.1;0,MA0133.1;0,MA0135.1;0.640746,MA0136.1;1.08519,MA0139.1;0.0460579,MA0140.1;5.08695,MA0141.1;0.371626,MA0142.1;1.07722,MA0143.1;0.814436,MA0144.1;0.342982,MA0145.1;0.0246034,MA0146.1;0.00176631,MA0147.1;0.1493,MA0148.1;2.30284,MA0149.1;0.282754,MA0062.2;0.000650504,MA0035.2;4.108,MA0039.2;0.0575174,MA0138.2;0.0521515,MA0002.2;1.25763,MA0137.2;0.651052,MA0104.2;0.109694,MA0047.2;0.927802,MA0112.2;0.136227,MA0065.2;0.138193,MA0150.1;1.3564,MA0151.1;0,MA0152.1;0.146953,MA0153.1;1.11771,MA0154.1;0.0946597,MA0155.1;0.172338,MA0156.1;0.596357,MA0157.1;0.640497,MA0158.1;0,MA0159.1;0.25359,MA0160.1;0.424565,MA0161.1;0,MA0162.1;0.000163925,MA0163.1;0.0107109,MA0164.1;1.40224,MA0080.2;1.53125,MA0018.2;0.606875,MA0099.2;0.279385,MA0079.2;3.86895e-11,MA0102.2;0.476919,MA0258.1;0.266115,MA0259.1;0.258267,MA0442.1;0
}}

Latest revision as of 14:42, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:114942702..114942717,-p@chr10:114942702..114942717
-
Mm9::chr10:115007065..115007091,+p1@A930009A15Rik
Mm9::chr10:115007097..115007111,+p2@A930009A15Rik
Mm9::chr10:12268684..12268712,-p@chr10:12268684..12268712
-
Mm9::chr10:80631625..80631629,-p@chr10:80631625..80631629
-
Mm9::chr11:102046694..102046712,+p@chr11:102046694..102046712
+
Mm9::chr11:102269771..102269787,-p@chr11:102269771..102269787
-
Mm9::chr11:108781813..108781824,+p9@Axin2
Mm9::chr11:108964022..108964064,-p@chr11:108964022..108964064
-
Mm9::chr11:115705295..115705300,-p@chr11:115705295..115705300
-
Mm9::chr11:118338138..118338144,+p2@Engase
Mm9::chr11:35759012..35759018,+p@chr11:35759012..35759018
+
Mm9::chr11:42971307..42971324,-p@chr11:42971307..42971324
-
Mm9::chr11:75825636..75825637,+p@chr11:75825636..75825637
+
Mm9::chr11:80603365..80603366,-p@chr11:80603365..80603366
-
Mm9::chr11:8458977..8458988,-p@chr11:8458977..8458988
-
Mm9::chr11:86393934..86393939,-p@chr11:86393934..86393939
-
Mm9::chr11:96797681..96797709,-p@chr11:96797681..96797709
-
Mm9::chr12:83223787..83223791,-p@chr12:83223787..83223791
-
Mm9::chr12:86771033..86771037,-p@chr12:86771033..86771037
-
Mm9::chr13:102248906..102248908,+p@chr13:102248906..102248908
+
Mm9::chr13:74199856..74199858,+p@chr13:74199856..74199858
+
Mm9::chr14:102240879..102240884,-p@chr14:102240879..102240884
-
Mm9::chr14:78304699..78304709,+p@chr14:78304699..78304709
+
Mm9::chr14:80400099..80400116,+p1@Olfm4
Mm9::chr14:80406025..80406057,+p@chr14:80406025..80406057
+
Mm9::chr14:80406074..80406083,+p@chr14:80406074..80406083
+
Mm9::chr14:80421016..80421024,+p@chr14:80421016..80421024
+
Mm9::chr14:80421087..80421098,+p@chr14:80421087..80421098
+
Mm9::chr14:80421229..80421237,+p@chr14:80421229..80421237
+
Mm9::chr14:80421967..80421987,+p@chr14:80421967..80421987
+
Mm9::chr14:80422038..80422047,+p@chr14:80422038..80422047
+
Mm9::chr14:80422131..80422146,+p@chr14:80422131..80422146
+
Mm9::chr14:80422367..80422374,+p@chr14:80422367..80422374
+
Mm9::chr14:80422516..80422525,+p@chr14:80422516..80422525
+
Mm9::chr15:100568814..100568821,-p@chr15:100568814..100568821
-
Mm9::chr15:77652903..77652912,+p@chr15:77652903..77652912
+
Mm9::chr15:77670701..77670706,+p@chr15:77670701..77670706
+
Mm9::chr15:78517622..78517624,+p@chr15:78517622..78517624
+
Mm9::chr15:78675302..78675304,-p@chr15:78675302..78675304
-
Mm9::chr16:30055801..30055806,+p@chr16:30055801..30055806
+
Mm9::chr16:32810541..32810552,-p@chr16:32810541..32810552
-
Mm9::chr16:95922162..95922166,+p@chr16:95922162..95922166
+
Mm9::chr16:96145917..96145922,+p@chr16:96145917..96145922
+
Mm9::chr16:96148458..96148459,+p@chr16:96148458..96148459
+
Mm9::chr17:14386739..14386748,+p@chr17:14386739..14386748
+
Mm9::chr17:14386816..14386837,+p@chr17:14386816..14386837
+
Mm9::chr17:14386840..14386863,+p@chr17:14386840..14386863
+
Mm9::chr17:14389709..14389718,-p@chr17:14389709..14389718
-
Mm9::chr17:57200158..57200180,+p@chr17:57200158..57200180
+
Mm9::chr17:84555761..84555773,-p@chr17:84555761..84555773
-
Mm9::chr19:23215457..23215463,-p@chr19:23215457..23215463
-
Mm9::chr19:24589295..24589302,-p@chr19:24589295..24589302
-
Mm9::chr19:37450719..37450732,-p@chr19:37450719..37450732
-
Mm9::chr19:47655378..47655382,-p@chr19:47655378..47655382
-
Mm9::chr19:5489077..5489091,-p@chr19:5489077..5489091
-
Mm9::chr19:56948531..56948548,+p3@Vwa2
Mm9::chr1:108091016..108091019,+p@chr1:108091016..108091019
+
Mm9::chr1:137077463..137077471,-p@chr1:137077463..137077471
-
Mm9::chr1:138117307..138117311,+p@chr1:138117307..138117311
+
Mm9::chr1:182877714..182877715,-p@chr1:182877714..182877715
-
Mm9::chr1:90912298..90912303,+p3@1700067G17Rik
Mm9::chr2:102526253..102526287,+p@chr2:102526253..102526287
+
Mm9::chr2:146839658..146839668,+p@chr2:146839658..146839668
+
Mm9::chr2:155378820..155378826,-p@chr2:155378820..155378826
-
Mm9::chr2:157917477..157917492,-p1@2010009K17Rik
Mm9::chr2:157917526..157917531,-p3@2010009K17Rik
Mm9::chr2:167904248..167904260,+p@chr2:167904248..167904260
+
Mm9::chr2:26357393..26357396,+p@chr2:26357393..26357396
+
Mm9::chr2:3250430..3250435,+p@chr2:3250430..3250435
+
Mm9::chr2:71588140..71588152,-p1@ENSMUST00000164635
p1@uc008kaz.1
Mm9::chr2:72314053..72314057,+p5@Cdca7
Mm9::chr2:84491058..84491102,+p@chr2:84491058..84491102
+
Mm9::chr3:108115823..108115848,+p@chr3:108115823..108115848
+
Mm9::chr3:122215917..122215967,-p@chr3:122215917..122215967
-
Mm9::chr3:126314780..126314810,-p@chr3:126314780..126314810
-
Mm9::chr3:145625636..145625642,+p@chr3:145625636..145625642
+
Mm9::chr4:132612085..132612097,-p@chr4:132612085..132612097
-
Mm9::chr4:138753652..138753654,+p@chr4:138753652..138753654
+
Mm9::chr4:155434167..155434177,+p@chr4:155434167..155434177
+
Mm9::chr5:136438809..136438830,+p@chr5:136438809..136438830
+
Mm9::chr5:142917060..142917064,+p@chr5:142917060..142917064
+
Mm9::chr5:29805118..29805137,-p1@Mnx1
Mm9::chr5:29805170..29805178,-p2@Mnx1
Mm9::chr5:32270354..32270364,-p@chr5:32270354..32270364
-
Mm9::chr5:3270374..3270385,+p@chr5:3270374..3270385
+
Mm9::chr5:36717523..36717532,+p@chr5:36717523..36717532
+
Mm9::chr5:64896749..64896757,+p@chr5:64896749..64896757
+
Mm9::chr5:65018091..65018099,+p@chr5:65018091..65018099
+
Mm9::chr5:99756112..99756132,-p@chr5:99756112..99756132
-
Mm9::chr6:113640487..113640495,-p@chr6:113640487..113640495
-
Mm9::chr6:125545038..125545041,-p@chr6:125545038..125545041
-
Mm9::chr6:134056281..134056293,+p@chr6:134056281..134056293
+
Mm9::chr6:87338872..87338886,-p2@Gkn3
Mm9::chr7:106310729..106310733,-p@chr7:106310729..106310733
-
Mm9::chr7:107307751..107307825,+p1@Lipt2
Mm9::chr7:107307827..107307840,+p@chr7:107307827..107307840
+
Mm9::chr7:107327189..107327214,+p1@Kcne3
Mm9::chr7:113260814..113260838,-p@chr7:113260814..113260838
-
Mm9::chr7:150154109..150154130,-p@chr7:150154109..150154130
-
Mm9::chr7:150154665..150154682,-p@chr7:150154665..150154682
-
Mm9::chr7:25535850..25535861,-p@chr7:25535850..25535861
-
Mm9::chr7:29588878..29588882,-p@chr7:29588878..29588882
-
Mm9::chr7:4101821..4101832,-p5@Leng9
Mm9::chr7:53178789..53178796,-p@chr7:53178789..53178796
-
Mm9::chr7:59266075..59266077,+p@chr7:59266075..59266077
+
Mm9::chr8:128443042..128443049,+p@chr8:128443042..128443049
+
Mm9::chr8:35685507..35685512,+p@chr8:35685507..35685512
+
Mm9::chr8:64192378..64192389,+p@chr8:64192378..64192389
+
Mm9::chr8:87181847..87181850,+p@chr8:87181847..87181850
+
Mm9::chr8:87186898..87186905,+p@chr8:87186898..87186905
+
Mm9::chr8:87188110..87188137,+p@chr8:87188110..87188137
+
Mm9::chr9:111364133..111364137,-p@chr9:111364133..111364137
-
Mm9::chr9:37338706..37338723,+p2@Esam
Mm9::chr9:44911919..44911945,+p@chr9:44911919..44911945
+
Mm9::chr9:44911949..44911976,+p@chr9:44911949..44911976
+
Mm9::chr9:44911977..44912003,+p@chr9:44911977..44912003
+
Mm9::chr9:44929248..44929260,+p@chr9:44929248..44929260
+
Mm9::chr9:44929280..44929296,+p@chr9:44929280..44929296
+
Mm9::chr9:66888939..66888949,+p@chr9:66888939..66888949
+
Mm9::chr9:66889535..66889538,+p@chr9:66889535..66889538
+
Mm9::chr9:69315761..69315767,+p@chr9:69315761..69315767
+
Mm9::chr9:96688284..96688299,-p@chr9:96688284..96688299
-
Mm9::chr9:96688300..96688331,-p@chr9:96688300..96688331
-
Mm9::chrX:136327130..136327162,+p@chrX:136327130..136327162
+
Mm9::chrX:20124864..20124868,+p@chrX:20124864..20124868
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.52239e-10
MA0004.10.235095
MA0006.10.11772
MA0007.10.318452
MA0009.11.08817
MA0014.14.95281e-05
MA0017.10.260739
MA0019.10.528052
MA0024.10.33025
MA0025.11.37271
MA0027.11.32996
MA0028.10.00420746
MA0029.10.548345
MA0030.10.563384
MA0031.10.77834
MA0038.11.57904
MA0040.10.0503513
MA0041.10.100113
MA0042.10.0834038
MA0043.10.570101
MA0046.13.48986
MA0048.10.0719073
MA0050.10.0196133
MA0051.10.0226399
MA0052.10.0527376
MA0055.11.05077
MA0056.10
MA0057.10.131245
MA0058.10.20983
MA0059.11.30951
MA0060.10.378103
MA0061.10.044485
MA0063.10
MA0066.11.17363
MA0067.10.583019
MA0068.10.196635
MA0069.10.195701
MA0070.10.187027
MA0071.10.685932
MA0072.10.179607
MA0073.10.191394
MA0074.10.0404093
MA0076.10.00329237
MA0077.10.368502
MA0078.10.361458
MA0081.10.0665135
MA0083.13.24689
MA0084.10.434425
MA0087.10.489284
MA0088.10.0152809
MA0089.10
MA0090.10.394823
MA0091.10.159294
MA0092.10.555305
MA0093.10.235532
MA0095.10
MA0098.10
MA0100.10.0879289
MA0101.10.0541451
MA0103.11.86192
MA0105.10.0109776
MA0106.10.0340705
MA0107.10.0701172
MA0108.22.5595
MA0109.10
MA0111.10.192807
MA0113.10.317913
MA0114.10.85486
MA0115.11.45036
MA0116.10.0393817
MA0117.10.239849
MA0119.10.26844
MA0122.10.260074
MA0124.10.508102
MA0125.10.814756
MA0130.10
MA0131.10.0113477
MA0132.10
MA0133.10
MA0135.10.640746
MA0136.11.08519
MA0139.10.0460579
MA0140.15.08695
MA0141.10.371626
MA0142.11.07722
MA0143.10.814436
MA0144.10.342982
MA0145.10.0246034
MA0146.10.00176631
MA0147.10.1493
MA0148.12.30284
MA0149.10.282754
MA0062.20.000650504
MA0035.24.108
MA0039.20.0575174
MA0138.20.0521515
MA0002.21.25763
MA0137.20.651052
MA0104.20.109694
MA0047.20.927802
MA0112.20.136227
MA0065.20.138193
MA0150.11.3564
MA0151.10
MA0152.10.146953
MA0153.11.11771
MA0154.10.0946597
MA0155.10.172338
MA0156.10.596357
MA0157.10.640497
MA0158.10
MA0159.10.25359
MA0160.10.424565
MA0161.10
MA0162.10.000163925
MA0163.10.0107109
MA0164.11.40224
MA0080.21.53125
MA0018.20.606875
MA0099.20.279385
MA0079.23.86895e-11
MA0102.20.476919
MA0258.10.266115
MA0259.10.258267
MA0442.10
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