FFCP PHASE1:Hg19::chr6:112575456..112575485,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:112575456..112575485,-
|short_description=p5@LAMA4
|description=CAGE_peak_5_at_LAMA4_5end
|association_with_transcript=201bp_to_ENST00000521398_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3910 | |EntrezGene=3910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |HGNC=6484 | ||
|TSSclassifier=strong | |||
|UniProt=E5RFQ2 | |UniProt=E5RFQ2 | ||
|association_with_transcript=201bp_to_ENST00000521398_5end | |||
|cluster_id=chr6:112575456..112575485,- | |||
|coexpression_cluster_id=C4546 | |||
|description=CAGE_peak_5_at_LAMA4_5end | |||
|id=chr6:112575456..112575485,- | |||
|ontology_enrichment_celltype=CL:0000055!2.03e-15!180;CL:0000057!1.58e-13!75;CL:0000136!1.74e-10!15;CL:0002620!8.19e-08!23;CL:0000222!9.30e-08!119;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57;CL:0000183!4.68e-07!59;CL:0000187!5.25e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.04e-14;13!CL:0002620;7.50e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.79e-13,15;CL:0002620,2.23e-09,23;CL:0000057,3.35e-09,76;CL:0000187,8.19e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.46e-07;5!DOID:450;2.46e-07;5!DOID:66;2.46e-07;5!DOID:423;2.46e-07;5!DOID:0080000;2.46e-07;5!DOID:11722;2.46e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.05e-07,5;DOID:450,1.05e-07,5;DOID:66,1.05e-07,5;DOID:423,1.05e-07,5;DOID:0080000,1.05e-07,5;DOID:11722,1.05e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!4.29e-11!79;UBERON:0007798!4.29e-11!79;UBERON:0000475!6.75e-11!365;UBERON:0000914!4.86e-09!83;UBERON:0002329!4.86e-09!83;UBERON:0003077!4.86e-09!83;UBERON:0003059!4.86e-09!83;UBERON:0007282!4.86e-09!83;UBERON:0009618!4.86e-09!83;UBERON:0007285!4.86e-09!83;UBERON:0000477!1.28e-08!286;UBERON:0004535!1.60e-08!110;UBERON:0000055!1.62e-08!69;UBERON:0002385!2.41e-08!63;UBERON:0001015!2.41e-08!63;UBERON:0000383!2.41e-08!63;UBERON:0004290!3.29e-08!70;UBERON:0000468!3.31e-08!659;UBERON:0001009!3.95e-08!113;UBERON:0001134!1.05e-07!61;UBERON:0002036!1.05e-07!61;UBERON:0003082!1.05e-07!61;UBERON:0004872!1.69e-07!84;UBERON:0000119!2.58e-07!312;UBERON:0001981!2.60e-07!60;UBERON:0007500!2.60e-07!60;UBERON:0004537!2.60e-07!60;UBERON:0006965!2.60e-07!60;UBERON:0003102!2.89e-07!95;UBERON:0004111!3.17e-07!241;UBERON:0000483!5.49e-07!309;UBERON:0000486!8.17e-07!82;UBERON:0002199!8.51e-07!45;UBERON:0002416!8.51e-07!45;UBERON:0001637!8.81e-07!42;UBERON:0003509!8.81e-07!42;UBERON:0004572!8.81e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.63e-07;9!UBERON:0000042;3.63e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,9.75e-09,46;UBERON:0002416,9.75e-09,46;UBERON:0003102,1.83e-08,99;UBERON:0007524,5.27e-07,73;UBERON:0003104,9.82e-07,160;UBERON:0009142,9.82e-07,160 | |||
|phase1_expression=0.908391896352783,6.20891519283851,2.67813367782345,1.0007329835313,7.59833860526389,0.872338524100369,7.59899634504932,3.15859936713415,12.2757245253924,0,0,0,0,1.23766352960047,1.98838425436749,1.34465029290355,0,0.730310090387373,0.975865597581014,0.123121058076788,0,0,0.286235987131057,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,1.0843174571537,3.50936537445123,1.30361867064741,0,0.973269740605272,0.472674085820339,0.221729397462564,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,1.25849830862972,0.550236083880135,0.626984899610432,0.516833518338658,2.49036383880697,2.67776490211736,0,3.04108842287405,0.976248230192678,0,0.81014194788176,0.625098097988558,0.22452937262617,0.788280363383256,0,0.949265659568129,0.366403487860815,0,0,0,0,0.759783069987479,4.50191214764944,10.8997915884549,1.77334191099179,0.560677600142307,0,0.24666754841716,1.8672662123986,0.404132016209064,0.490385709340376,0.908144565869588,0.576175924479999,0,0.624320153660641,0.570471821544449,1.34503812496621,0.117434498643765,0,0,0.408308342509787,0.245668634623536,1.23990937410919,4.75201142912821,0.989067717114227,0.910161361938026,0,0,0.250237039743928,0.831192346452549,1.75591048352335,0.612975591598039,3.45547535485173,0.340296549480063,1.79389635688862,2.13557388818567,2.54318281391474,3.30100205692843,1.8549455262919,4.12224864073007,1.48893485065272,1.85653965465393,0.779496041289589,2.01947019395292,2.20919756741518,1.93975268182574,2.4850671476163,0.201504196455281,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,0,2.57296375277154,1.38134921352481,4.64367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,1.03993478527958,1.44331342025273,0,0.70445216541493,0.577465791044295,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.285826432630578,0.448524337381443,0.43596006883328,0.5867062865676,0.387815147273333,0,0,0.797814349754612,1.04007436911366,0.514414748524284,0,0.532844358032199,2.00169191121407,0.542621605391443,0,0.65147236858747,1.06617584622764,0,2.1100756394171,0.871533458600294,2.29937879718731,0,0,0,0,2.29723871668228,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0,0,0.76228387266739,0,0,0.502548796003046,0,0,0,0,1.96306386750624,1.00034104211935,0.542530047399471,0.831883446123229,0.535286966391485,0.315404830067869,1.05427273493442,1.20378439891088,0,1.03473071292505,0,0.184369168541703,1.04260337361699,0.391602314925481,1.02943027143257,0,0,0,0,0,0,0.992431231275107,1.2276957863045,0.841980283299221,1.92208723883551,0.511707249066704,1.28683136914886,0,0.771048469013278,1.06537035187876,0.821271560138091,0.519254429183621,1.04589340613963,0,0,0,0.459257792658427,1.0925470080403,2.62248829918848,0,0,0,0,0,1.13733384070897,1.19065593693561,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0.457847324091717,0.495056999523528,0,0,0,1.06337790121334,0.616194468458578,0.767518373630648,0.137836572484531,2.25582514223375,1.30515024522806,0.596586391912706,1.33548053470106,0,0,0,0,0,4.09256050879832,0,0.308033580176089,1.06461206063404,0.869932992075073,2.59453906745488,0.429374660225974,1.116475108079,1.58189712359363,1.14378116354295,0,2.99557291623744,0.636406495851874,1.56989728039846,1.2591072030832,0.54907405947211,1.41374882814824,0.202182481573316,0,0.842516912477962,1.95053495635836,2.19342140668156,0,1.22849920267187,1.27264888758341,1.13008116620243,0.551365343546124,3.3171948762061,2.19225442626881,0,1.31178950409327,0.202910376962704,0.30982349809975,0,0,0,0,0,2.11107635297664,2.96365403663912,0.379473173765715,0.349934720244983,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07667176470977,0,0,0,0,0,0,0,1.54736358051564,0.779160935160341,0,0,0.796991953004279,1.38141957765574,0,0.102268682502155,0,0.622079175323615,0,0,0,0.986434056369336,0,1.11136990144637,0.969332746095218,0.0927680981618513,0,0,0,3.62499787717397,0.1137934482855,0,0,0,0,0.173624994933292,1.77148277162768,0.844175070377856,0,0.331737779793674,0,0.219385397153973,0,0,1.69290568708354,2.96249345202203,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0.995261931078505,0.619202951523374,0,0,0,0,0.741412462787447,0.802577647298789,0,0,0,0,0.789168805698781,0,0.30607276163049,2.78020950365347,0.150323419414493,0.103688191397247,0,0.330991955875499,0.313932918407225,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0.872901148395775,0,1.12990370390266,0.411125773940253,0,0.189932387867636,0,0.160317640503067,1.06726497369676,0.39961921916426,0,0,0,0,0,0,0.271808412147228,0.104602846312333,0.713987523454252,0,0.600420288709789,0.684526894459965,0,0.42976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| ||
|short_description=p5@LAMA4 | |||
}} | }} |
Latest revision as of 22:11, 19 September 2015
Short description: | p5@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LAMA4_5end |
Coexpression cluster: | C4546_mature_Adipocyte_Fibroblast_mesenchymal_vagina_Smooth_normal |
Association with transcript: | 201bp_to_ENST00000521398_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.79e-13 | 15 |
skin fibroblast | 2.23e-09 | 23 |
fibroblast | 3.35e-09 | 76 |
muscle cell | 8.19e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
integument | 9.75e-09 | 46 |
integumental system | 9.75e-09 | 46 |
surface structure | 1.83e-08 | 99 |
dense mesenchyme tissue | 5.27e-07 | 73 |
mesenchyme | 9.82e-07 | 160 |
entire embryonic mesenchyme | 9.82e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.05e-07 | 5 |
myotonic disease | 1.05e-07 | 5 |
muscle tissue disease | 1.05e-07 | 5 |
myopathy | 1.05e-07 | 5 |
muscular disease | 1.05e-07 | 5 |
myotonic dystrophy | 1.05e-07 | 5 |