FFCP PHASE1:Hg19::chr6:111804341..111804383,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:111804341..111804383,-
|short_description=p1@REV3L
|description=CAGE_peak_1_at_REV3L_5end
|association_with_transcript=30bp_to_ENST00000368802,ENST00000543...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5980 | |EntrezGene=5980 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9968 | |HGNC=9968 | ||
|TSSclassifier=strong | |||
|UniProt=O60673,F5H5X8 | |UniProt=O60673,F5H5X8 | ||
|association_with_transcript=30bp_to_ENST00000368802,ENST00000543871,NM_002912_5end | |||
|cluster_id=chr6:111804341..111804383,- | |||
|description=CAGE_peak_1_at_REV3L_5end | |||
|id=chr6:111804341..111804383,- | |||
|ontology_enrichment_celltype=CL:0002057!2.64e-18!42;CL:0000860!6.58e-17!45;CL:0000738!3.92e-12!140;CL:0000766!6.80e-12!76;CL:0000557!1.80e-11!71;CL:0002031!2.09e-11!124;CL:0000839!2.46e-10!70;CL:0002087!2.81e-09!119;CL:0000037!4.31e-09!172;CL:0000566!4.31e-09!172;CL:0002009!4.94e-09!65;CL:0002032!1.60e-08!165;CL:0000837!1.60e-08!165;CL:0002194!2.59e-08!63;CL:0000576!2.59e-08!63;CL:0000040!2.59e-08!63;CL:0000559!2.59e-08!63;CL:0000136!8.55e-08!15;CL:0000988!1.93e-07!182;CL:0000763!4.01e-07!112;CL:0000049!4.01e-07!112;CL:0000134!8.10e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.28e-15;33!CL:0002057;8.28e-15;33!CL:0000576;1.80e-09;48!CL:0000473;1.02e-08;39!CL:0000234;1.02e-08;39!CL:0000766;5.14e-08;69!CL:0000136;3.32e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.64e-18,42;CL:0002057,2.64e-18,42;CL:0000473,2.07e-13,48;CL:0000234,2.07e-13,48;CL:0000766,7.90e-13,72;CL:0000738,1.05e-12,136;CL:0000557,1.97e-12,67;CL:0002031,5.22e-12,120;CL:0000839,3.20e-11,66;CL:0002009,7.20e-10,61;CL:0002087,8.43e-10,115;CL:0000037,1.78e-09,168;CL:0002194,4.13e-09,59;CL:0000576,4.13e-09,59;CL:0000040,4.13e-09,59;CL:0000559,4.13e-09,59;CL:0002032,6.72e-09,161;CL:0000837,6.72e-09,161;CL:0000988,5.13e-08,177;CL:0000136,8.55e-08,15;CL:0000763,1.47e-07,108;CL:0000049,1.47e-07,108;CL:0000134,4.40e-07,354;CL:0002320,9.93e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.26e-11!86;UBERON:0004765!3.49e-11!101;UBERON:0001434!3.49e-11!101;UBERON:0002371!1.20e-10!80;UBERON:0007023!2.92e-10!115;UBERON:0002390!7.02e-09!102;UBERON:0003061!7.02e-09!102;UBERON:0002193!2.06e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.50e-12,82;UBERON:0002371,1.84e-11,76;UBERON:0001434,1.94e-11,100;UBERON:0004765,3.58e-10,90;UBERON:0007023,3.94e-10,114;UBERON:0002405,9.62e-10,93;UBERON:0002390,1.89e-09,98;UBERON:0003061,1.89e-09,98;UBERON:0002193,7.36e-08,108 | |||
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| ||
|short_description=p1@REV3L | |||
}} | }} |
Latest revision as of 20:51, 19 September 2015
Short description: | p1@REV3L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_REV3L_5end |
Coexpression cluster: | NA |
Association with transcript: | 30bp_to_ENST00000368802, ENST00000543871, NM_002912_5end |
EntrezGene: | REV3L |
HGNC: | 9968 |
UniProt: | O60673F5H5X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.64e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.64e-18 | 42 |
defensive cell | 2.07e-13 | 48 |
phagocyte | 2.07e-13 | 48 |
myeloid leukocyte | 7.90e-13 | 72 |
leukocyte | 1.05e-12 | 136 |
granulocyte monocyte progenitor cell | 1.97e-12 | 67 |
hematopoietic lineage restricted progenitor cell | 5.22e-12 | 120 |
myeloid lineage restricted progenitor cell | 3.20e-11 | 66 |
macrophage dendritic cell progenitor | 7.20e-10 | 61 |
nongranular leukocyte | 8.43e-10 | 115 |
hematopoietic stem cell | 1.78e-09 | 168 |
monopoietic cell | 4.13e-09 | 59 |
monocyte | 4.13e-09 | 59 |
monoblast | 4.13e-09 | 59 |
promonocyte | 4.13e-09 | 59 |
hematopoietic oligopotent progenitor cell | 6.72e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.72e-09 | 161 |
hematopoietic cell | 5.13e-08 | 177 |
fat cell | 8.55e-08 | 15 |
myeloid cell | 1.47e-07 | 108 |
common myeloid progenitor | 1.47e-07 | 108 |
mesenchymal cell | 4.40e-07 | 354 |
connective tissue cell | 9.93e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone element | 3.50e-12 | 82 |
bone marrow | 1.84e-11 | 76 |
skeletal system | 1.94e-11 | 100 |
skeletal element | 3.58e-10 | 90 |
adult organism | 3.94e-10 | 114 |
immune system | 9.62e-10 | 93 |
hematopoietic system | 1.89e-09 | 98 |
blood island | 1.89e-09 | 98 |
hemolymphoid system | 7.36e-08 | 108 |