FF:10463-106H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005462 | |||
|accession_numbers=CAGE;DRX008014;DRR008886;DRZ000311;DRZ001696;DRZ011661;DRZ013046 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.57!369.43!EHF;;chr3:189507432..189507459,+!p1@TP63!2.22!165.16!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.22!163.20!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.02!102.67!ELF3;;chr17:7493405..7493419,-!p1@SOX15!1.95!89.10!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.94!97.13!IRF6;;chr8:10588010..10588030,-!p1@SOX7!1.79!61.24!SOX7;;chr17:80797886..80797906,-!p1@ZNF750!1.79!59.99!ZNF750;;chr2:176969228..176969260,+!p1@HOXD11!1.77!58.03!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.63!41.78!GRHL2;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.57!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.58!37.14!FOXA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.54!54.46!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.54!42.32!NCOA7;;chr1:6479968..6479986,-!p1@HES2!1.54!33.75!HES2;;chr11:34642656..34642667,+!p2@EHF!1.54!33.39!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.53!334.07!KLF5;;chr6:126240380..126240430,+!p2@NCOA7!1.53!82.85!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.82!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!26.96!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.21!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.31!19.46!IRF6;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.25!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.64!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.71!TFAP2C;;chr17:46687959..46688007,-!p2@HOXB7!1.23!21.96!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.46!PITX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.18!714.75!NFE2L1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.39!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.11!DLX5;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.18!BNC1;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.61!SOX2;;chr19:2867325..2867348,+!p1@ZNF556!1.09!11.43!ZNF556;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.07!TFAP2A;;chr6:126240463..126240489,+!p6@NCOA7!1.07!12.14!NCOA7;;chr2:46524897..46524911,+!p2@EPAS1!1.05!28.57!EPAS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.04!12.14!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.03!26.60!ARNTL2;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.64!HOXA9;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.46!BHLHA15;;chr6:126102292..126102329,+!p3@NCOA7!1.00!30.00!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.93!HOXA9;;chr2:70142232..70142251,+!p1@MXD1!0.99!50.35!MXD1;;chr14:35872962..35873025,-!p3@NFKBIA!0.99!22.50!NFKBIA;;chr17:46688334..46688385,-!p1@HOXB7!0.98!12.50!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.97!10.18!HOXC4;;chr5:137804405..137804444,+!p3@EGR1!0.97!10.00!EGR1;;chr22:24093154..24093183,-!p2@ZNF70!0.97!8.39!ZNF70;;chr20:30193083..30193098,+!p1@ID1!0.96!677.08!ID1;;chr1:158979792..158979814,+!p2@IFI16!0.96!79.64!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.95!10.18!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!0.95!9.82!NCOA7;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.86!ZIC1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.94!71.24!PPP1R13L;;chr2:178128149..178128198,-!p2@NFE2L2!0.94!43.03!NFE2L2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!39.28!BCL11A;;chr18:19749541..19749557,+!p1@GATA6!0.94!24.82!GATA6;;chr7:27153454..27153469,-!p2@HOXA3!0.94!7.68!HOXA3;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.50!GRHL2;;chr3:189507460..189507471,+!p3@TP63!0.93!7.50!TP63;;chr6:85473156..85473210,-!p2@TBX18!0.92!9.11!TBX18;;chr3:193853927..193853944,+!p1@HES1!0.89!230.87!HES1;;chr17:80797863..80797874,-!p2@ZNF750!0.89!6.79!ZNF750;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.61!LHX6;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.43!HOXC13;;chr14:37132241..37132304,+!p3@PAX9!0.87!6.43!PAX9;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.43!SOX2;;chr1:212782094..212782109,+!p1@ATF3!0.86!181.59!ATF3;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.39!CREB5;;chr1:158979872..158979898,+!p3@IFI16!0.86!20.36!IFI16;;chr6:126102254..126102289,+!p5@NCOA7!0.85!17.68!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.79!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.89!TBX20;;chr8:102504979..102505010,+!p2@GRHL2!0.84!5.89!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!5.89!NKX2-8;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.49!NR4A1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.83!12.86!ZNF395;;chr4:299227..299272,-!p1@ZNF732!0.83!5.71!ZNF732;;chr3:141868357..141868393,-!p3@TFDP2!0.82!39.46!TFDP2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.54!IRX2;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.54!DLX4;;chr20:18038521..18038571,-!p1@OVOL2!0.82!5.54!OVOL2;;chr1:935467..935484,-!p1@HES4!0.81!26.07!HES4;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.36!TFAP2A;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.36!CDX2;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!358.54!NFKBIA;;chr9:14314131..14314147,-!p2@NFIB!0.79!30.89!NFIB;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr14:38064307..38064323,-!p3@FOXA1!0.79!5.18!FOXA1;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.00!HOXD8;;chr17:46703212..46703238,-!p2@HOXB9!0.78!5.00!HOXB9;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.75!SOX13;;chr6:19837592..19837621,+!p1@ID4!0.77!32.50!ID4;;chr1:158979851..158979865,+!p5@IFI16!0.77!11.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.03!ZFP64;;chr15:67418119..67418162,+!p5@SMAD3!0.77!5.54!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.76!4.82!IRF6;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.82!ZIC1;;chr12:11802600..11802685,+!p1@ETV6!0.75!78.39!ETV6;;chr12:80084737..80084763,-!p3@PAWR!0.75!19.11!PAWR;;chr14:24630465..24630531,+!p1@IRF9!0.74!191.59!IRF9;;chr17:47439437..47439533,-!p1@ZNF652!0.74!40.35!ZNF652;;chr12:27485823..27485868,+!p2@ARNTL2!0.74!19.82!ARNTL2;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.75!SIX1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.36!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.74!4.46!HOXD11;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.46!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.74!4.46!HOXB7;;chr17:46703942..46703964,-!p4@HOXB9!0.74!4.46!HOXB9;;chr9:129376201..129376225,+!p1@LMX1B!0.74!4.46!LMX1B;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr19:45252008..45252024,+!p2@BCL3!0.72!15.36!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.72!5.18!EGR1;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.29!ZNF323;;chr3:189507523..189507535,+!p5@TP63!0.72!4.29!TP63;;chr8:72756063..72756125,-!p1@MSC!0.71!9.11!MSC;;chr2:176969124..176969155,+!p5@HOXD11!0.71!4.11!HOXD11;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.11!FOXA1;;chr19:9609272..9609297,-!p1@ZNF560!0.71!4.11!ZNF560;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!56.78!ZC3H12A;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.21!HOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.69!30.89!ARNTL2;;chr2:157189180..157189290,-!p1@NR4A2!0.69!23.21!NR4A2;;chr1:161736038..161736056,+!p4@ATF6!0.69!10.00!ATF6;;chr1:935398..935465,-!p2@HES4!0.69!8.75!HES4;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.36!GRHL1;;chr19:33865009..33865090,+!p3@CEBPG!0.69!5.36!CEBPG;;chr12:54393880..54393962,+!p1@HOXC9!0.69!3.93!HOXC9;;chr2:61108695..61108753,+!p1@REL!0.68!30.00!REL;;chr16:30537839..30537929,-!p1@ZNF768!0.68!27.14!ZNF768;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.28!TOX2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.14!IFI16;;chr1:50889103..50889145,-!p1@DMRTA2!0.68!3.75!DMRTA2;;chr5:170736243..170736279,+!p1@TLX3!0.68!3.75!TLX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.75!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.68!3.75!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.68!3.75!DLX5;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.75!ZNF704;;chr9:110252035..110252057,-!p1@KLF4!0.67!68.03!KLF4;;chr12:53625966..53626012,-!p2@RARG!0.67!10.71!RARG;;chr19:50432453..50432468,+!p1@ATF5!0.66!232.83!ATF5;;chr8:49833948..49833973,-!p2@SNAI2!0.66!25.89!SNAI2;;chr19:33864571..33864596,+!p2@CEBPG!0.66!9.82!CEBPG;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.36!ZNF860;;chr14:24630902..24630948,+!p2@IRF9!0.66!4.46!IRF9;;chr10:8095593..8095625,+!p3@GATA3!0.66!4.29!GATA3;;chr17:46703687..46703740,-!p1@HOXB9!0.66!3.57!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.57!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.57!HOXB13;;chr1:50889155..50889173,-!p2@DMRTA2!0.66!3.57!DMRTA2;;chr4:38665810..38665827,+!p1@KLF3!0.65!59.28!KLF3;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.21!NFIB;;chr12:19592405..19592492,+!p2@AEBP2!0.65!35.00!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.53!FOSL1;;chr14:23755297..23755350,-!p1@HOMEZ!0.64!47.14!HOMEZ;;chr7:17338266..17338282,+!p1@AHR!0.64!42.50!AHR;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.53!EGR1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.64!6.07!MEIS3P1;;chr15:67458861..67458879,+!p17@SMAD3!0.64!3.39!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.64!3.39!BARX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.64!3.39!MLXIPL;;chr9:100616439..100616476,+!p3@FOXE1!0.64!3.39!FOXE1;;chr17:46125707..46125746,+!p2@NFE2L1!0.63!204.98!NFE2L1;;chr6:21597600..21597664,+!p3@SOX4!0.62!5.71!SOX4;;chr5:170736216..170736238,+!p2@TLX3!0.62!3.21!TLX3;;chr3:69915385..69915438,+!p3@MITF!0.62!3.21!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.62!3.21!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.04!DMRTA1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.82!SMARCA2;;chr1:164528297..164528309,+!p9@PBX1!0.60!4.11!PBX1;;chr2:178129414..178129517,-!p1@NFE2L2!0.59!140.52!NFE2L2;;chr9:3525968..3526016,-!p1@RFX3!0.59!20.18!RFX3;;chr17:47439568..47439641,-!p2@ZNF652!0.59!19.64!ZNF652;;chr8:123793860..123793921,+!p2@ZHX2!0.59!9.28!ZHX2;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.93!DLX2;;chr10:97889464..97889494,+!p3@ZNF518A!0.59!6.07!ZNF518A;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.18!MECOM;;chr20:48809000..48809053,+!p12@CEBPB!0.59!4.11!CEBPB;;chr17:46675420..46675465,-!p3@HOXB6!0.59!3.39!HOXB6;;chr6:126240490..126240501,+!p11@NCOA7!0.59!2.86!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.59!2.86!HOXA6;;chr9:124976154..124976177,-!p5@LHX6!0.59!2.86!LHX6;;chr2:113012592..113012671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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.57!369.43!EHF;;chr3:189507432..189507459,+!p1@TP63!2.22!165.16!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.22!163.20!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.02!102.67!ELF3;;chr17:7493405..7493419,-!p1@SOX15!1.95!89.10!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.94!97.13!IRF6;;chr8:10588010..10588030,-!p1@SOX7!1.79!61.24!SOX7;;chr17:80797886..80797906,-!p1@ZNF750!1.79!59.99!ZNF750;;chr2:176969228..176969260,+!p1@HOXD11!1.77!58.03!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.63!41.78!GRHL2;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.57!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.58!37.14!FOXA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.54!54.46!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.54!42.32!NCOA7;;chr1:6479968..6479986,-!p1@HES2!1.54!33.75!HES2;;chr11:34642656..34642667,+!p2@EHF!1.54!33.39!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.53!334.07!KLF5;;chr6:126240380..126240430,+!p2@NCOA7!1.53!82.85!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.82!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!26.96!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.21!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.31!19.46!IRF6;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.25!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.64!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.71!TFAP2C;;chr17:46687959..46688007,-!p2@HOXB7!1.23!21.96!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.46!PITX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.18!714.75!NFE2L1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.39!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.11!DLX5;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.18!BNC1;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.61!SOX2;;chr19:2867325..2867348,+!p1@ZNF556!1.09!11.43!ZNF556;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.07!TFAP2A;;chr6:126240463..126240489,+!p6@NCOA7!1.07!12.14!NCOA7;;chr2:46524897..46524911,+!p2@EPAS1!1.05!28.57!EPAS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.04!12.14!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.03!26.60!ARNTL2;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.64!HOXA9;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.46!BHLHA15;;chr6:126102292..126102329,+!p3@NCOA7!1.00!30.00!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.93!HOXA9;;chr2:70142232..70142251,+!p1@MXD1!0.99!50.35!MXD1;;chr14:35872962..35873025,-!p3@NFKBIA!0.99!22.50!NFKBIA;;chr17:46688334..46688385,-!p1@HOXB7!0.98!12.50!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.97!10.18!HOXC4;;chr5:137804405..137804444,+!p3@EGR1!0.97!10.00!EGR1;;chr22:24093154..24093183,-!p2@ZNF70!0.97!8.39!ZNF70;;chr20:30193083..30193098,+!p1@ID1!0.96!677.08!ID1;;chr1:158979792..158979814,+!p2@IFI16!0.96!79.64!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.95!10.18!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!0.95!9.82!NCOA7;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.86!ZIC1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.94!71.24!PPP1R13L;;chr2:178128149..178128198,-!p2@NFE2L2!0.94!43.03!NFE2L2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!39.28!BCL11A;;chr18:19749541..19749557,+!p1@GATA6!0.94!24.82!GATA6;;chr7:27153454..27153469,-!p2@HOXA3!0.94!7.68!HOXA3;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.50!GRHL2;;chr3:189507460..189507471,+!p3@TP63!0.93!7.50!TP63;;chr6:85473156..85473210,-!p2@TBX18!0.92!9.11!TBX18;;chr3:193853927..193853944,+!p1@HES1!0.89!230.87!HES1;;chr17:80797863..80797874,-!p2@ZNF750!0.89!6.79!ZNF750;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.61!LHX6;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.43!HOXC13;;chr14:37132241..37132304,+!p3@PAX9!0.87!6.43!PAX9;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.43!SOX2;;chr1:212782094..212782109,+!p1@ATF3!0.86!181.59!ATF3;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.39!CREB5;;chr1:158979872..158979898,+!p3@IFI16!0.86!20.36!IFI16;;chr6:126102254..126102289,+!p5@NCOA7!0.85!17.68!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.79!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.89!TBX20;;chr8:102504979..102505010,+!p2@GRHL2!0.84!5.89!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!5.89!NKX2-8;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.49!NR4A1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.83!12.86!ZNF395;;chr4:299227..299272,-!p1@ZNF732!0.83!5.71!ZNF732;;chr3:141868357..141868393,-!p3@TFDP2!0.82!39.46!TFDP2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.54!IRX2;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.54!DLX4;;chr20:18038521..18038571,-!p1@OVOL2!0.82!5.54!OVOL2;;chr1:935467..935484,-!p1@HES4!0.81!26.07!HES4;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.36!TFAP2A;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.36!CDX2;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!358.54!NFKBIA;;chr9:14314131..14314147,-!p2@NFIB!0.79!30.89!NFIB;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr14:38064307..38064323,-!p3@FOXA1!0.79!5.18!FOXA1;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.00!HOXD8;;chr17:46703212..46703238,-!p2@HOXB9!0.78!5.00!HOXB9;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.75!SOX13;;chr6:19837592..19837621,+!p1@ID4!0.77!32.50!ID4;;chr1:158979851..158979865,+!p5@IFI16!0.77!11.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.03!ZFP64;;chr15:67418119..67418162,+!p5@SMAD3!0.77!5.54!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.76!4.82!IRF6;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.82!ZIC1;;chr12:11802600..11802685,+!p1@ETV6!0.75!78.39!ETV6;;chr12:80084737..80084763,-!p3@PAWR!0.75!19.11!PAWR;;chr14:24630465..24630531,+!p1@IRF9!0.74!191.59!IRF9;;chr17:47439437..47439533,-!p1@ZNF652!0.74!40.35!ZNF652;;chr12:27485823..27485868,+!p2@ARNTL2!0.74!19.82!ARNTL2;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.75!SIX1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.36!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.74!4.46!HOXD11;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.46!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.74!4.46!HOXB7;;chr17:46703942..46703964,-!p4@HOXB9!0.74!4.46!HOXB9;;chr9:129376201..129376225,+!p1@LMX1B!0.74!4.46!LMX1B;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr19:45252008..45252024,+!p2@BCL3!0.72!15.36!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.72!5.18!EGR1;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.29!ZNF323;;chr3:189507523..189507535,+!p5@TP63!0.72!4.29!TP63;;chr8:72756063..72756125,-!p1@MSC!0.71!9.11!MSC;;chr2:176969124..176969155,+!p5@HOXD11!0.71!4.11!HOXD11;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.11!FOXA1;;chr19:9609272..9609297,-!p1@ZNF560!0.71!4.11!ZNF560;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!56.78!ZC3H12A;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.21!HOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.69!30.89!ARNTL2;;chr2:157189180..157189290,-!p1@NR4A2!0.69!23.21!NR4A2;;chr1:161736038..161736056,+!p4@ATF6!0.69!10.00!ATF6;;chr1:935398..935465,-!p2@HES4!0.69!8.75!HES4;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.36!GRHL1;;chr19:33865009..33865090,+!p3@CEBPG!0.69!5.36!CEBPG;;chr12:54393880..54393962,+!p1@HOXC9!0.69!3.93!HOXC9;;chr2:61108695..61108753,+!p1@REL!0.68!30.00!REL;;chr16:30537839..30537929,-!p1@ZNF768!0.68!27.14!ZNF768;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.28!TOX2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.14!IFI16;;chr1:50889103..50889145,-!p1@DMRTA2!0.68!3.75!DMRTA2;;chr5:170736243..170736279,+!p1@TLX3!0.68!3.75!TLX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.75!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.68!3.75!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.68!3.75!DLX5;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.75!ZNF704;;chr9:110252035..110252057,-!p1@KLF4!0.67!68.03!KLF4;;chr12:53625966..53626012,-!p2@RARG!0.67!10.71!RARG;;chr19:50432453..50432468,+!p1@ATF5!0.66!232.83!ATF5;;chr8:49833948..49833973,-!p2@SNAI2!0.66!25.89!SNAI2;;chr19:33864571..33864596,+!p2@CEBPG!0.66!9.82!CEBPG;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.36!ZNF860;;chr14:24630902..24630948,+!p2@IRF9!0.66!4.46!IRF9;;chr10:8095593..8095625,+!p3@GATA3!0.66!4.29!GATA3;;chr17:46703687..46703740,-!p1@HOXB9!0.66!3.57!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.57!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.57!HOXB13;;chr1:50889155..50889173,-!p2@DMRTA2!0.66!3.57!DMRTA2;;chr4:38665810..38665827,+!p1@KLF3!0.65!59.28!KLF3;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.21!NFIB;;chr12:19592405..19592492,+!p2@AEBP2!0.65!35.00!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.53!FOSL1;;chr14:23755297..23755350,-!p1@HOMEZ!0.64!47.14!HOMEZ;;chr7:17338266..17338282,+!p1@AHR!0.64!42.50!AHR;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.53!EGR1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.64!6.07!MEIS3P1;;chr15:67458861..67458879,+!p17@SMAD3!0.64!3.39!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.64!3.39!BARX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.64!3.39!MLXIPL;;chr9:100616439..100616476,+!p3@FOXE1!0.64!3.39!FOXE1;;chr17:46125707..46125746,+!p2@NFE2L1!0.63!204.98!NFE2L1;;chr6:21597600..21597664,+!p3@SOX4!0.62!5.71!SOX4;;chr5:170736216..170736238,+!p2@TLX3!0.62!3.21!TLX3;;chr3:69915385..69915438,+!p3@MITF!0.62!3.21!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.62!3.21!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.04!DMRTA1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.82!SMARCA2;;chr1:164528297..164528309,+!p9@PBX1!0.60!4.11!PBX1;;chr2:178129414..178129517,-!p1@NFE2L2!0.59!140.52!NFE2L2;;chr9:3525968..3526016,-!p1@RFX3!0.59!20.18!RFX3;;chr17:47439568..47439641,-!p2@ZNF652!0.59!19.64!ZNF652;;chr8:123793860..123793921,+!p2@ZHX2!0.59!9.28!ZHX2;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.93!DLX2;;chr10:97889464..97889494,+!p3@ZNF518A!0.59!6.07!ZNF518A;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.18!MECOM;;chr20:48809000..48809053,+!p12@CEBPB!0.59!4.11!CEBPB;;chr17:46675420..46675465,-!p3@HOXB6!0.59!3.39!HOXB6;;chr6:126240490..126240501,+!p11@NCOA7!0.59!2.86!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.59!2.86!HOXA6;;chr9:124976154..124976177,-!p5@LHX6!0.59!2.86!LHX6;;chr2:113012592..113012671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| ||
Line 37: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10463-106H4 | |id=FF:10463-106H4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102024 | |is_a=EFO:0002091;;FF:0000210;;FF:0102024 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11252 | |||
|library_id_phase_based=2:CNhs11252 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10463 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10463 | |||
|name=squamous cell carcinoma cell line:EC-GI-10 | |name=squamous cell carcinoma cell line:EC-GI-10 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11252,LSID757,release008,COMPLETED | |profile_hcage=CNhs11252,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 84: | Line 99: | ||
|top_motifs=ZEB1:2.11632970669;SNAI1..3:1.81288760321;TBX4,5:1.46474152533;PDX1:1.39638391255;ADNP_IRX_SIX_ZHX:1.32146692005;FOXA2:1.31307792932;NKX2-1,4:1.22930672823;NKX6-1,2:1.21085825952;ZBTB16:1.16125657248;FOXQ1:1.15726801996;TP53:1.15651057833;FOX{I1,J2}:1.12728654911;VSX1,2:1.08143636679;TEF:1.01815218224;POU1F1:0.98053588891;FOXL1:0.958499563467;HOX{A6,A7,B6,B7}:0.886433012956;NR6A1:0.878320894272;RBPJ:0.87561427712;MYOD1:0.8634871054;PITX1..3:0.834077526425;NKX2-3_NKX2-5:0.810145476994;LMO2:0.806367443829;STAT5{A,B}:0.762105618548;BPTF:0.743967546731;ONECUT1,2:0.719387512988;ELK1,4_GABP{A,B1}:0.708409883247;IRF7:0.705393217912;CDX1,2,4:0.681547034238;AIRE:0.66107015773;FOXP1:0.646996052573;CDC5L:0.63753442324;bHLH_family:0.631822585193;ATF2:0.629087345611;ZNF384:0.612393065545;NANOG:0.579402522025;SP1:0.548802302995;FOXM1:0.53184349269;HSF1,2:0.520016035863;CEBPA,B_DDIT3:0.51555702118;POU2F1..3:0.465413953226;MYBL2:0.422677269231;FOXO1,3,4:0.402129711904;ARID5B:0.399115975304;IKZF1:0.365617371284;E2F1..5:0.33671804472;FOS_FOS{B,L1}_JUN{B,D}:0.326857080855;NKX2-2,8:0.320792521117;NFE2:0.32017693663;ALX1:0.307139035288;IKZF2:0.302846654983;SOX17:0.293106467955;OCT4_SOX2{dimer}:0.288689330892;FOX{F1,F2,J1}:0.285899812379;NR5A1,2:0.262080771345;ATF5_CREB3:0.23799317318;HIF1A:0.236274234573;POU5F1:0.22183916679;PBX1:0.21997796698;NFIL3:0.212380598541;ATF4:0.205428278922;YY1:0.203901050882;SOX2:0.190985475363;TBP:0.190835264867;IRF1,2:0.180810372171;LHX3,4:0.179298712192;ZNF143:0.174062707982;NKX3-1:0.16892578259;ELF1,2,4:0.167116346057;NR1H4:0.157869482932;GLI1..3:0.154870764402;HLF:0.154068695531;NFE2L2:0.150921719457;PAX2:0.150464171144;NFKB1_REL_RELA:0.127360363089;FOXN1:0.120928207641;NFY{A,B,C}:0.103034831903;TFDP1:0.0991515937912;NFIX:0.0857258665027;NRF1:0.0788870442731;TEAD1:0.0783165095076;HMGA1,2:0.069303665052;HOX{A4,D4}:0.0655658716935;FOX{D1,D2}:0.060316474115;FOSL2:0.0399575410055;TFAP2{A,C}:0.0309905583534;POU6F1:0.0266137775532;TFAP2B:0.0257168935274;EN1,2:0.0115343398837;GFI1B:0.00740367686685;CRX:0.00378744957238;TOPORS:0.00195970752016;ZNF423:-0.00945750203581;TLX1..3_NFIC{dimer}:-0.016771411729;BACH2:-0.0577458794645;PPARG:-0.0613399913959;STAT2,4,6:-0.0673480766824;HBP1_HMGB_SSRP1_UBTF:-0.0712004860053;RFX2..5_RFXANK_RFXAP:-0.0718240128183;XCPE1{core}:-0.0803237599552;HNF1A:-0.0920473332125;NKX3-2:-0.0935192666094;MEF2{A,B,C,D}:-0.0985945262973;PATZ1:-0.106371070042;PAX8:-0.106392950296;ZNF148:-0.11511055263;EP300:-0.128249609096;PAX6:-0.130944822593;HOXA9_MEIS1:-0.137356069102;PAX1,9:-0.140614111476;DMAP1_NCOR{1,2}_SMARC:-0.145206109557;ZIC1..3:-0.146962510809;RFX1:-0.152848841727;MED-1{core}:-0.153011526792;MYB:-0.160940374609;BREu{core}:-0.175911776074;PAX4:-0.179200015412;REST:-0.180576528843;GATA6:-0.19116798776;HIC1:-0.192088688305;ZFP161:-0.196098771884;TFCP2:-0.201509151476;DBP:-0.232251289354;MTE{core}:-0.235835455279;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.247582607988;MTF1:-0.248961959825;PRRX1,2:-0.265007083405;CREB1:-0.267896015537;FOXP3:-0.276726370282;HAND1,2:-0.282701461909;AHR_ARNT_ARNT2:-0.285329289573;KLF4:-0.289219445105;LEF1_TCF7_TCF7L1,2:-0.289259736476;SOX{8,9,10}:-0.345213906813;HOX{A5,B5}:-0.347378879912;GTF2I:-0.349520499486;JUN:-0.351675953133;PAX3,7:-0.371288122109;MAZ:-0.378293709731;CUX2:-0.388664534509;ESR1:-0.399904247967;HNF4A_NR2F1,2:-0.415291166066;EGR1..3:-0.422400796239;RORA:-0.446311925049;UFEwm:-0.497268532014;GTF2A1,2:-0.518017970274;ETS1,2:-0.522478961841;GFI1:-0.535398865733;SPI1:-0.555320297488;RREB1:-0.577918950952;GZF1:-0.589703453023;SREBF1,2:-0.600558921149;PRDM1:-0.605283445956;TLX2:-0.608079516757;SOX5:-0.619747942978;ZNF238:-0.629260942199;SPIB:-0.634874556612;ALX4:-0.651134525871;MYFfamily:-0.658443029434;EBF1:-0.659632960409;ATF6:-0.668667996207;STAT1,3:-0.683906160968;AR:-0.687767283579;PAX5:-0.688072021303;ZBTB6:-0.691676363002;T:-0.720874101015;TAL1_TCF{3,4,12}:-0.731072717326;RUNX1..3:-0.760993106158;FOXD3:-0.801082578204;XBP1:-0.831354975664;POU3F1..4:-0.841252952729;EVI1:-0.862933490453;RXR{A,B,G}:-0.882886052148;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.888606083492;NHLH1,2:-0.905483316406;NFE2L1:-0.953461279716;SRF:-0.993153282105;NANOG{mouse}:-1.00531234156;GATA4:-1.02013307661;TGIF1:-1.03740937572;HES1:-1.06533478966;TFAP4:-1.14333038875;GCM1,2:-1.18517770007;NR3C1:-1.18790211219;MAFB:-1.21210664937;NFATC1..3:-1.28281291576;SMAD1..7,9:-1.28602254041;RXRA_VDR{dimer}:-1.31479798857;MZF1:-1.35282165234;HMX1:-1.68343625723;ESRRA:-1.70364408566;SPZ1:-2.30969467394 | |top_motifs=ZEB1:2.11632970669;SNAI1..3:1.81288760321;TBX4,5:1.46474152533;PDX1:1.39638391255;ADNP_IRX_SIX_ZHX:1.32146692005;FOXA2:1.31307792932;NKX2-1,4:1.22930672823;NKX6-1,2:1.21085825952;ZBTB16:1.16125657248;FOXQ1:1.15726801996;TP53:1.15651057833;FOX{I1,J2}:1.12728654911;VSX1,2:1.08143636679;TEF:1.01815218224;POU1F1:0.98053588891;FOXL1:0.958499563467;HOX{A6,A7,B6,B7}:0.886433012956;NR6A1:0.878320894272;RBPJ:0.87561427712;MYOD1:0.8634871054;PITX1..3:0.834077526425;NKX2-3_NKX2-5:0.810145476994;LMO2:0.806367443829;STAT5{A,B}:0.762105618548;BPTF:0.743967546731;ONECUT1,2:0.719387512988;ELK1,4_GABP{A,B1}:0.708409883247;IRF7:0.705393217912;CDX1,2,4:0.681547034238;AIRE:0.66107015773;FOXP1:0.646996052573;CDC5L:0.63753442324;bHLH_family:0.631822585193;ATF2:0.629087345611;ZNF384:0.612393065545;NANOG:0.579402522025;SP1:0.548802302995;FOXM1:0.53184349269;HSF1,2:0.520016035863;CEBPA,B_DDIT3:0.51555702118;POU2F1..3:0.465413953226;MYBL2:0.422677269231;FOXO1,3,4:0.402129711904;ARID5B:0.399115975304;IKZF1:0.365617371284;E2F1..5:0.33671804472;FOS_FOS{B,L1}_JUN{B,D}:0.326857080855;NKX2-2,8:0.320792521117;NFE2:0.32017693663;ALX1:0.307139035288;IKZF2:0.302846654983;SOX17:0.293106467955;OCT4_SOX2{dimer}:0.288689330892;FOX{F1,F2,J1}:0.285899812379;NR5A1,2:0.262080771345;ATF5_CREB3:0.23799317318;HIF1A:0.236274234573;POU5F1:0.22183916679;PBX1:0.21997796698;NFIL3:0.212380598541;ATF4:0.205428278922;YY1:0.203901050882;SOX2:0.190985475363;TBP:0.190835264867;IRF1,2:0.180810372171;LHX3,4:0.179298712192;ZNF143:0.174062707982;NKX3-1:0.16892578259;ELF1,2,4:0.167116346057;NR1H4:0.157869482932;GLI1..3:0.154870764402;HLF:0.154068695531;NFE2L2:0.150921719457;PAX2:0.150464171144;NFKB1_REL_RELA:0.127360363089;FOXN1:0.120928207641;NFY{A,B,C}:0.103034831903;TFDP1:0.0991515937912;NFIX:0.0857258665027;NRF1:0.0788870442731;TEAD1:0.0783165095076;HMGA1,2:0.069303665052;HOX{A4,D4}:0.0655658716935;FOX{D1,D2}:0.060316474115;FOSL2:0.0399575410055;TFAP2{A,C}:0.0309905583534;POU6F1:0.0266137775532;TFAP2B:0.0257168935274;EN1,2:0.0115343398837;GFI1B:0.00740367686685;CRX:0.00378744957238;TOPORS:0.00195970752016;ZNF423:-0.00945750203581;TLX1..3_NFIC{dimer}:-0.016771411729;BACH2:-0.0577458794645;PPARG:-0.0613399913959;STAT2,4,6:-0.0673480766824;HBP1_HMGB_SSRP1_UBTF:-0.0712004860053;RFX2..5_RFXANK_RFXAP:-0.0718240128183;XCPE1{core}:-0.0803237599552;HNF1A:-0.0920473332125;NKX3-2:-0.0935192666094;MEF2{A,B,C,D}:-0.0985945262973;PATZ1:-0.106371070042;PAX8:-0.106392950296;ZNF148:-0.11511055263;EP300:-0.128249609096;PAX6:-0.130944822593;HOXA9_MEIS1:-0.137356069102;PAX1,9:-0.140614111476;DMAP1_NCOR{1,2}_SMARC:-0.145206109557;ZIC1..3:-0.146962510809;RFX1:-0.152848841727;MED-1{core}:-0.153011526792;MYB:-0.160940374609;BREu{core}:-0.175911776074;PAX4:-0.179200015412;REST:-0.180576528843;GATA6:-0.19116798776;HIC1:-0.192088688305;ZFP161:-0.196098771884;TFCP2:-0.201509151476;DBP:-0.232251289354;MTE{core}:-0.235835455279;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.247582607988;MTF1:-0.248961959825;PRRX1,2:-0.265007083405;CREB1:-0.267896015537;FOXP3:-0.276726370282;HAND1,2:-0.282701461909;AHR_ARNT_ARNT2:-0.285329289573;KLF4:-0.289219445105;LEF1_TCF7_TCF7L1,2:-0.289259736476;SOX{8,9,10}:-0.345213906813;HOX{A5,B5}:-0.347378879912;GTF2I:-0.349520499486;JUN:-0.351675953133;PAX3,7:-0.371288122109;MAZ:-0.378293709731;CUX2:-0.388664534509;ESR1:-0.399904247967;HNF4A_NR2F1,2:-0.415291166066;EGR1..3:-0.422400796239;RORA:-0.446311925049;UFEwm:-0.497268532014;GTF2A1,2:-0.518017970274;ETS1,2:-0.522478961841;GFI1:-0.535398865733;SPI1:-0.555320297488;RREB1:-0.577918950952;GZF1:-0.589703453023;SREBF1,2:-0.600558921149;PRDM1:-0.605283445956;TLX2:-0.608079516757;SOX5:-0.619747942978;ZNF238:-0.629260942199;SPIB:-0.634874556612;ALX4:-0.651134525871;MYFfamily:-0.658443029434;EBF1:-0.659632960409;ATF6:-0.668667996207;STAT1,3:-0.683906160968;AR:-0.687767283579;PAX5:-0.688072021303;ZBTB6:-0.691676363002;T:-0.720874101015;TAL1_TCF{3,4,12}:-0.731072717326;RUNX1..3:-0.760993106158;FOXD3:-0.801082578204;XBP1:-0.831354975664;POU3F1..4:-0.841252952729;EVI1:-0.862933490453;RXR{A,B,G}:-0.882886052148;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.888606083492;NHLH1,2:-0.905483316406;NFE2L1:-0.953461279716;SRF:-0.993153282105;NANOG{mouse}:-1.00531234156;GATA4:-1.02013307661;TGIF1:-1.03740937572;HES1:-1.06533478966;TFAP4:-1.14333038875;GCM1,2:-1.18517770007;NR3C1:-1.18790211219;MAFB:-1.21210664937;NFATC1..3:-1.28281291576;SMAD1..7,9:-1.28602254041;RXRA_VDR{dimer}:-1.31479798857;MZF1:-1.35282165234;HMX1:-1.68343625723;ESRRA:-1.70364408566;SPZ1:-2.30969467394 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10463-106H4;search_select_hide=table117:FF:10463-106H4 | |||
}} | }} |
Latest revision as of 14:03, 3 June 2020
Name: | squamous cell carcinoma cell line:EC-GI-10 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11252 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11252
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11252
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.706 |
10 | 10 | 0.73 |
100 | 100 | 0.235 |
101 | 101 | 0.425 |
102 | 102 | 0.53 |
103 | 103 | 0.879 |
104 | 104 | 0.446 |
105 | 105 | 0.214 |
106 | 106 | 0.874 |
107 | 107 | 0.3 |
108 | 108 | 0.479 |
109 | 109 | 0.0529 |
11 | 11 | 0.638 |
110 | 110 | 0.896 |
111 | 111 | 0.922 |
112 | 112 | 0.826 |
113 | 113 | 0.444 |
114 | 114 | 0.324 |
115 | 115 | 0.638 |
116 | 116 | 0.313 |
117 | 117 | 0.133 |
118 | 118 | 0.954 |
119 | 119 | 0.321 |
12 | 12 | 0.101 |
120 | 120 | 0.933 |
121 | 121 | 0.695 |
122 | 122 | 0.46 |
123 | 123 | 0.527 |
124 | 124 | 0.15 |
125 | 125 | 0.723 |
126 | 126 | 0.331 |
127 | 127 | 0.687 |
128 | 128 | 0.416 |
129 | 129 | 0.539 |
13 | 13 | 0.00287 |
130 | 130 | 0.639 |
131 | 131 | 0.177 |
132 | 132 | 0.809 |
133 | 133 | 0.0111 |
134 | 134 | 0.0558 |
135 | 135 | 0.075 |
136 | 136 | 0.0552 |
137 | 137 | 0.0186 |
138 | 138 | 0.698 |
139 | 139 | 0.2 |
14 | 14 | 0.748 |
140 | 140 | 0.732 |
141 | 141 | 0.606 |
142 | 142 | 0.769 |
143 | 143 | 0.0375 |
144 | 144 | 0.235 |
145 | 145 | 0.905 |
146 | 146 | 0.849 |
147 | 147 | 0.183 |
148 | 148 | 0.601 |
149 | 149 | 0.0976 |
15 | 15 | 0.946 |
150 | 150 | 0.234 |
151 | 151 | 0.801 |
152 | 152 | 0.185 |
153 | 153 | 0.716 |
154 | 154 | 0.188 |
155 | 155 | 0.226 |
156 | 156 | 0.97 |
157 | 157 | 0.86 |
158 | 158 | 0.262 |
159 | 159 | 0.44 |
16 | 16 | 0.933 |
160 | 160 | 0.166 |
161 | 161 | 0.501 |
162 | 162 | 0.781 |
163 | 163 | 0.46 |
164 | 164 | 0.464 |
165 | 165 | 0.739 |
166 | 166 | 0.904 |
167 | 167 | 0.514 |
168 | 168 | 0.965 |
169 | 169 | 0.523 |
17 | 17 | 0.317 |
18 | 18 | 0.544 |
19 | 19 | 0.111 |
2 | 2 | 0.644 |
20 | 20 | 0.0627 |
21 | 21 | 0.235 |
22 | 22 | 0.341 |
23 | 23 | 0.68 |
24 | 24 | 0.356 |
25 | 25 | 0.645 |
26 | 26 | 0.727 |
27 | 27 | 0.333 |
28 | 28 | 0.263 |
29 | 29 | 0.159 |
3 | 3 | 0.76 |
30 | 30 | 0.715 |
31 | 31 | 0.232 |
32 | 32 | 0.00299 |
33 | 33 | 0.371 |
34 | 34 | 0.309 |
35 | 35 | 0.126 |
36 | 36 | 0.383 |
37 | 37 | 0.907 |
38 | 38 | 0.957 |
39 | 39 | 0.304 |
4 | 4 | 0.718 |
40 | 40 | 0.116 |
41 | 41 | 0.00538 |
42 | 42 | 0.272 |
43 | 43 | 0.434 |
44 | 44 | 0.887 |
45 | 45 | 0.865 |
46 | 46 | 0.585 |
47 | 47 | 0.826 |
48 | 48 | 0.517 |
49 | 49 | 0.129 |
5 | 5 | 0.754 |
50 | 50 | 0.338 |
51 | 51 | 0.941 |
52 | 52 | 0.802 |
53 | 53 | 0.845 |
54 | 54 | 0.882 |
55 | 55 | 0.919 |
56 | 56 | 0.781 |
57 | 57 | 0.23 |
58 | 58 | 0.833 |
59 | 59 | 0.147 |
6 | 6 | 0.544 |
60 | 60 | 0.739 |
61 | 61 | 0.183 |
62 | 62 | 0.541 |
63 | 63 | 0.471 |
64 | 64 | 0.689 |
65 | 65 | 0.452 |
66 | 66 | 0.0247 |
67 | 67 | 0.629 |
68 | 68 | 0.0576 |
69 | 69 | 0.488 |
7 | 7 | 0.791 |
70 | 70 | 0.0351 |
71 | 71 | 0.777 |
72 | 72 | 0.565 |
73 | 73 | 0.403 |
74 | 74 | 0.0637 |
75 | 75 | 0.32 |
76 | 76 | 0.4 |
77 | 77 | 0.733 |
78 | 78 | 0.201 |
79 | 79 | 0.109 |
8 | 8 | 0.55 |
80 | 80 | 0.0385 |
81 | 81 | 0.233 |
82 | 82 | 0.0559 |
83 | 83 | 0.945 |
84 | 84 | 0.717 |
85 | 85 | 0.4 |
86 | 86 | 0.505 |
87 | 87 | 0.0458 |
88 | 88 | 0.483 |
89 | 89 | 0.537 |
9 | 9 | 0.144 |
90 | 90 | 0.79 |
91 | 91 | 0.11 |
92 | 92 | 0.155 |
93 | 93 | 0.493 |
94 | 94 | 0.245 |
95 | 95 | 0.326 |
96 | 96 | 0.371 |
97 | 97 | 0.984 |
98 | 98 | 0.0787 |
99 | 99 | 0.692 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11252
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA