UBERON:0001708: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0001708 | |id=UBERON:0001708 | ||
|is_a=UBERON: | |is_a=UBERON:0004121 ;;UBERON:0010314 ;;UBERON:0010912 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=jaw | |name=jaw skeleton | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON: | |part_of=UBERON:0011595 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal and cartilaginous elements of the first pharyngeal arch.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal and cartilaginous elements of the first pharyngeal arch.[TAO]" xsd:string | ||
Latest revision as of 17:19, 12 September 2014
| Name: | jaw skeleton | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]." [Wikipedia:Jaw] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior splanchnocranium" RELATED [] "jaw cartilage" EXACT [ZFA:0001227] "jaws" RELATED [] "mandibular arch" RELATED [TAO:0001227] "mandibular arch skeleton" EXACT [ZFA:0001227] "oral jaw skeleton" RELATED [] "pharyngeal arch 1 skeleton" RELATED [] "visceral arch 1" RELATED [] | ||
| Comments: | TODO: move ZFA:0001227 (it is the entire jaw skeleton). Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). | ||
| Alt_id: | UBERON:FMA_54396-MA_0001905-ZFA_0001227 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010912(subdivision of skeleton) |
|---|---|
| part_of: | UBERON:0011595(jaw region) |
Children
| part of: | UBERON:0003277 (skeleton of upper jaw),UBERON:0012360 (bone of jaw) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
- 12142-128E9 (Mallassez-derived cells, donor1 (MZH3))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001708 (jaw skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-147 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_21e30417a2edaa8bccde25c6f3d08f70 | p@chr22:23586671..23586679, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_21e30417a2edaa8bccde25c6f3d08f70 | p@chr22:23586671..23586679, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p@chr9:22256680..22256685, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p@chr10:106205565..106205599, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p1@DEFB4A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p@chr10:106205565..106205599, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p@chr9:22256680..22256685, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_abc89d1a7cd66e02746b950cf4a1fdf8 | p1@DEFB4A |
| 4.23e-89 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_fe22b9b53aa8cb76d7267e21dc0837b8 | p@chr10:106205503..106205518, + |
| 4.23e-89 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_fe22b9b53aa8cb76d7267e21dc0837b8 | p@chr10:106205503..106205518, + |
| 5.72e-89 | FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_9339d128b9a724e4a7550d6809362ea2 | p2@KRT16P1 |
| 5.72e-89 | FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_9339d128b9a724e4a7550d6809362ea2 | p2@KRT16P1 |
| 7.73e-89 | FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_20ba878e43c01f2afd1408309edaec43 | p@chr16:80068152..80068165, - |
| 7.73e-89 | FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_20ba878e43c01f2afd1408309edaec43 | p@chr16:80068152..80068165, - |
| 2.01e-74 | FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_1f5a2fdff2aa48037e338e2555625b42 | p@chr11:102140952..102140956, + |
| 2.01e-74 | FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_1f5a2fdff2aa48037e338e2555625b42 | p@chr11:102140952..102140956, + |
| 1.16e-73 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_188fad334f74ce8a964f542b28be38c9 | p@chr4:143470541..143470551, + |
| 1.16e-73 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_188fad334f74ce8a964f542b28be38c9 | p@chr4:143470541..143470551, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_3c2c0c5622b85ad7be192c364f53f652 | p@chr16:57954541..57954548, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_3c2c0c5622b85ad7be192c364f53f652 | p@chr16:57954541..57954548, - |
| 2.61e-64 | FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_efa9906a02df3b708283d080876056d7 | p@chr7:137570496..137570504, - |
| 2.61e-64 | FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_efa9906a02df3b708283d080876056d7 | p@chr7:137570496..137570504, - |
| 3.24e-64 | FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_030b888a4b149d2ef7f72b75a82d2b84 | p@chr1:7447129..7447134, + |
| 3.24e-64 | FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_030b888a4b149d2ef7f72b75a82d2b84 | p@chr1:7447129..7447134, + |
| 6.18e-64 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_8d7255911942c021a2fe582e99c5a1c7 | p@chr21:44168074..44168079, + |
| 6.18e-64 | FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_8d7255911942c021a2fe582e99c5a1c7 | p@chr3:47155553..47155568, - |
| 6.18e-64 | FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_8d7255911942c021a2fe582e99c5a1c7 | p@chr3:47155553..47155568, - |
| 6.18e-64 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_8d7255911942c021a2fe582e99c5a1c7 | p@chr21:44168074..44168079, + |
| 2.15e-56 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_010545db767089d1d7e8d5ce1f0c4051 | p@chr10:106205489..106205498, + |
| 2.15e-56 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_010545db767089d1d7e8d5ce1f0c4051 | p@chr10:106205489..106205498, + |
| 5.53e-56 | FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_28bff54a68c743518031dec1a27274ea | p@chr18:20493912..20493923, + |
| 5.53e-56 | FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_28bff54a68c743518031dec1a27274ea | p@chr18:20493912..20493923, + |
| 6.68e-56 | FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_816991b9a50a28e378309022680e6c27 | p@chr18:9649081..9649088, + |
| 6.68e-56 | FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_816991b9a50a28e378309022680e6c27 | p@chr18:9649081..9649088, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_dba7e6698cfd19dbaa692793951bfbaa | p@chr1:116072140..116072172, + |
| 2.23e-50 | FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_dba7e6698cfd19dbaa692793951bfbaa | p@chr1:116072140..116072172, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_53d796798fdc6690892606e5e8dcb67b | p@chr21:27558561..27558565, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_53d796798fdc6690892606e5e8dcb67b | p@chr4:155387574..155387588, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_53d796798fdc6690892606e5e8dcb67b | p14@C17orf67 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_53d796798fdc6690892606e5e8dcb67b | p14@C17orf67 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_53d796798fdc6690892606e5e8dcb67b | p@chr21:27558561..27558565, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_53d796798fdc6690892606e5e8dcb67b | p@chr4:155387574..155387588, - |
| 3.11e-50 | FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_42e945966700b9a8cca0af4332226ab9 | p@chr9:16094653..16094654, + |
| 3.11e-50 | FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_42e945966700b9a8cca0af4332226ab9 | p@chr9:16094653..16094654, + |
| 4.37e-50 | FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_353e08a4b5effd4630392c645da32d3c | p@chr14:81221483..81221489, + |
| 4.37e-50 | FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_353e08a4b5effd4630392c645da32d3c | p@chr14:81221483..81221489, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_ed17537433a3354237031064fbbc68df | p5@IFNK |
| 5.14e-50 | FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_ed17537433a3354237031064fbbc68df | p5@IFNK |
| 6.11e-50 | FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_c9157d3c90e67a125d3628aa4087b4aa | p36@PTK2 |
| 6.11e-50 | FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_c9157d3c90e67a125d3628aa4087b4aa | p36@PTK2 |
| 3.1e-45 | FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_ee3b856f7bb5709fad64077c43674fd3 | p@chr12:98739159..98739191, - |
| 3.1e-45 | FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_ee3b856f7bb5709fad64077c43674fd3 | p@chr12:98739159..98739191, - |
| 3.1e-45 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_ee3b856f7bb5709fad64077c43674fd3 | p@chr18:20493879..20493891, + |
| 3.1e-45 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_ee3b856f7bb5709fad64077c43674fd3 | p@chr18:20493879..20493891, + |
| 4.19e-45 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_10eedbb6d633b650f14c0b6d89c60fba | p@chr8:124850358..124850380, + |
| 4.19e-45 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_10eedbb6d633b650f14c0b6d89c60fba | p@chr8:124850358..124850380, + |
| 9.63e-42 | FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_7f8a215713073f6fc6b4d784fdbec028 | p23@ODZ2 |
| 9.63e-42 | FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_7f8a215713073f6fc6b4d784fdbec028 | p23@ODZ2 |
| 1.27e-41 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_015208cc2ad829e160a0c36ce3aa1fb3 | p@chr13:30259768..30259777, + |
| 1.27e-41 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_015208cc2ad829e160a0c36ce3aa1fb3 | p@chr13:30259768..30259777, + |
| 2.2e-41 | FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_8503121c3b0d74f2457fca64aa9bd75c | p@chr16:57954525..57954533, - |
| 2.2e-41 | FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_8503121c3b0d74f2457fca64aa9bd75c | p@chr16:57954525..57954533, - |
| 8.67e-41 | FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_2c9526eb635eb30f359f936dcf6019b9 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 8.67e-41 | FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_2c9526eb635eb30f359f936dcf6019b9 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.31e-40 | FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1fd7afa50b609fa404c088ccefba28ff | p@chr5:167247103..167247112, + |
| 1.31e-40 | FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1fd7afa50b609fa404c088ccefba28ff | p@chr5:167247103..167247112, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_f1a63d1abdfbd21f2f29f5fe41070fd3 | p20@CCDC91 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_f1a63d1abdfbd21f2f29f5fe41070fd3 | p20@CCDC91 |
| 4.94e-40 | FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_fa3baafe0692aa994626acf447209903 | p8@TOP1MT |
| 4.94e-40 | FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_fa3baafe0692aa994626acf447209903 | p8@TOP1MT |
| 4.61e-38 | FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_071328318b14ae9b2177e2ceb9e00016 | p@chr12:28116496..28116507, - |
| 4.61e-38 | FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_071328318b14ae9b2177e2ceb9e00016 | p@chr12:28116496..28116507, - |
| 2.1e-35 | FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_b8fa369d8f3b161a14351b83cba4da07 | p@chr7:137570475..137570486, - |
| 2.1e-35 | FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_b8fa369d8f3b161a14351b83cba4da07 | p@chr7:137570475..137570486, - |
| 3.35e-35 | FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_de667b9b05ead1147c29fe14d8dfd99e | p1@ANXA8L2 |
| 3.35e-35 | FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_de667b9b05ead1147c29fe14d8dfd99e | p1@ANXA8L2 |
| 5.06e-34 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_b06299db4a14a928b10a8d6209097eed | p4@IFNK |
| 5.06e-34 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_b06299db4a14a928b10a8d6209097eed | p4@IFNK |
| 9.88e-34 | FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_217e3daf66cbbdd33abb1afbd6ff9e2b | p@chr4:71388662..71388695, + |
| 9.88e-34 | FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_217e3daf66cbbdd33abb1afbd6ff9e2b | p@chr4:71388662..71388695, + |
| 9.88e-34 | FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_217e3daf66cbbdd33abb1afbd6ff9e2b | p1@KRT16P1 |
| 9.88e-34 | FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_217e3daf66cbbdd33abb1afbd6ff9e2b | p1@KRT16P1 |
| 4.98e-33 | FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_78a4bbcd505aa44cca419eb686f23ad0 | p@chr18:9617195..9617198, - |
| 4.98e-33 | FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_78a4bbcd505aa44cca419eb686f23ad0 | p@chr18:9617195..9617198, - |
| 7.69e-33 | FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_9f80f55bd3620454f1e433a547b4425a | p@chr11:13073062..13073067, + |
| 7.69e-33 | FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_9f80f55bd3620454f1e433a547b4425a | p@chr11:13073062..13073067, + |
| 9.55e-33 | FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_733ff0dbd4bf52561f89b1235a235597 | p2@HEPHL1 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_733ff0dbd4bf52561f89b1235a235597 | p@chr12:47182487..47182490, - |
| 9.55e-33 | FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_733ff0dbd4bf52561f89b1235a235597 | p@chr12:47182487..47182490, - |
| 9.55e-33 | FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_733ff0dbd4bf52561f89b1235a235597 | p2@HEPHL1 |
| 1.18e-32 | FFCP PHASE1:Hg19::chr1:242927602..242927613,-#_174af6ed5c30e7ba2023ae713569fc30 | p@chr1:242927602..242927613, - |
| 1.18e-32 | FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_174af6ed5c30e7ba2023ae713569fc30 | p@chr6:29643393..29643442, - |
| 1.18e-32 | FFCP PHASE2:Hg19::chr1:242927602..242927613,-#_174af6ed5c30e7ba2023ae713569fc30 | p@chr1:242927602..242927613, - |
| 1.18e-32 | FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_174af6ed5c30e7ba2023ae713569fc30 | p@chr6:29643393..29643442, - |
| 1.47e-32 | FFCP PHASE2:Hg19::chr15:42566543..42566553,+#_3ad640bee55503b22aa1c1c468661315 | p11@GANC |
| 1.47e-32 | FFCP PHASE1:Hg19::chr15:42566543..42566553,+#_3ad640bee55503b22aa1c1c468661315 | p11@GANC |
| 2.03e-32 | FFCP PHASE1:Hg19::chr8:105212349..105212367,+#_8028ff4c3af7797e2b3b1ad39697430b | p@chr8:105212349..105212367, + |
| 2.03e-32 | FFCP PHASE2:Hg19::chr8:105212349..105212367,+#_8028ff4c3af7797e2b3b1ad39697430b | p@chr8:105212349..105212367, + |
| 2.12e-30 | FFCP PHASE1:Hg19::chr3:149510368..149510386,-#_85e6fd3c3b804c4902c7750954d5dedb | p5@ANKUB1 |
| 2.12e-30 | FFCP PHASE2:Hg19::chr3:149510368..149510386,-#_85e6fd3c3b804c4902c7750954d5dedb | p5@ANKUB1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal and cartilaginous elements of the first pharyngeal arch.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
