UBERON:0001690: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0001690 | |id=UBERON:0001690 | ||
|is_a=UBERON:0000020;;UBERON:0010314 | |is_a=UBERON:0000020 ;;UBERON:0010314 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=ear | |name=ear | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000033;;UBERON:0002105 | |part_of=UBERON:0000033;;UBERON:0002105 | ||
Latest revision as of 17:19, 12 September 2014
| Name: | ear | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory apparatus" RELATED [] "auris" RELATED [BTO:0000368] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system) |
Children
| part of: | UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_1d13cb136fd2abf98a4e0d45469142ff | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_1d13cb136fd2abf98a4e0d45469142ff | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_1d13cb136fd2abf98a4e0d45469142ff | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Sec11a |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_1d13cb136fd2abf98a4e0d45469142ff | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_1d13cb136fd2abf98a4e0d45469142ff | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_1d13cb136fd2abf98a4e0d45469142ff | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_1d13cb136fd2abf98a4e0d45469142ff | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_1d13cb136fd2abf98a4e0d45469142ff | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Otog |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ff | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ff | p9@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_1d13cb136fd2abf98a4e0d45469142ff | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_1d13cb136fd2abf98a4e0d45469142ff | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_1d13cb136fd2abf98a4e0d45469142ff | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@9230102O04Rik |
