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MCL coexpression mm9:425: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!5.99e-13!73;UBERON:0004121!6.73e-13!95;UBERON:0000924!6.73e-13!95;UBERON:0006601!6.73e-13!95;UBERON:0001016!2.80e-12!75;UBERON:0002346!1.53e-10!64;UBERON:0003075!1.53e-10!64;UBERON:0007284!1.53e-10!64;UBERON:0010314!2.98e-10!92;UBERON:0010371!3.49e-10!73;UBERON:0003056!3.26e-08!49;UBERON:0000922!1.01e-07!320;UBERON:0000468!1.02e-07!333;UBERON:0000073!2.56e-07!54;UBERON:0001049!2.96e-07!52;UBERON:0005068!2.96e-07!52;UBERON:0006241!2.96e-07!52;UBERON:0007135!2.96e-07!52
|tfbs_overrepresentation_for_novel_motifs=0.48778,1.63025,0.873196,0.191238,0.0790596,0.201606,0.743966,0.0371334,0.15797,0.372426,0.236307,0.722367,0.615635,0.27987,0.0878075,0,1.1241,0.0750368,0.130179,0.278706,0.385752,1.75007,0.764446,0.0782709,1.43588,0.301898,0.534309,1.16441,0.338701,0.963927,0.595646,0.531719,0.929382,0.756943,0.296456,0.115941,0.244093,0.715898,0.214473,0.399439,0.0770075,1.13898,0.0688446,0.0888852,0.369976,0.539875,1.73124,0.6478,0.0489995,1.69338,0.426383,2.3675,0.372474,0.661847,0.67813,1.42128,0.110603,0.699566,0.111806,1.41536,0.513661,0.882655,1.06787,0.4166,0.294453,0.451957,0.806865,1.14503,0.509463,1.00145,1.33165,0.153772,2.25262,0.709559,1.13129,0.0942652,0.756603,0.363297,0.498264,0.392419,0.0397272,2.01736,0.330377,0.0348785,1.4658,2.97423,0.138203,0.649538,0.377064,1.30447,0.873554,1.47543,0.543309,0.0821171,0.45882,0.0497835,0.334928,0.545856,0.373124,0.835565,0.0693846,0.531465,0.645628,0.4269,0.425983,2.51398,0.478524,0.225669,0.79738,1.26837,0.925979,0.647285,0.394208,0.67478,0.880323,0.263255,0.0863406,0.565346,0.442771,0.238974,0.714636,0.398522,0.303371,0.951399,0.932468,0.501574,0.276618,3.358,0.805419,0.0836776,0.629874,0.546435,0.777296,0.296474,0.9011,0.174785,0.501821,0.211406,0.853868,1.66928,1.27308,0.811357,0.313144,0.541193,0.420352,0.210705,0.375553,1.62988,0.505775,0.974862,1.77735,2.86413,0.66331,0.194002,0.29573,0.739975,0.324625,0.647202,0.160402,0.167568,0.862985,0.601424,3.20057,0.15582,0.417485,0.289792,0.0688048,0.259556,0.979717
}}

Latest revision as of 15:17, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:60513186..60513212,+p2@Llgl1
Mm9::chr11:60513220..60513252,+p3@Llgl1
Mm9::chr12:109792880..109792899,+p6@Evl
Mm9::chr12:109792911..109792933,+p4@Evl
Mm9::chr12:109792944..109792962,+p2@Evl
Mm9::chr16:4541794..4541839,-p2@Srl
Mm9::chr17:35035408..35035446,+p1@Ehmt2
Mm9::chr1:74552618..74552679,+p2@Rqcd1
Mm9::chr2:76486028..76486048,-p2@Prkra
Mm9::chr3:129763756..129763767,-p5@Sec24b
Mm9::chr3:129763768..129763783,-p3@Sec24b
Mm9::chr3:94641455..94641486,+p4@Pogz
Mm9::chr4:117852559..117852640,-p1@Kdm4a
Mm9::chr4:128483680..128483715,-p3@Zfp362
Mm9::chr6:122289651..122289691,-p2@Phc1
Mm9::chr6:86354335..86354374,+p2@Tia1
Mm9::chr7:25292076..25292114,+p4@Zfp428
Mm9::chr8:97855656..97855736,-p1@Zfp319


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.16.34644
MA0004.10.559722
MA0006.12.07081
MA0007.10.534201
MA0009.10.5557
MA0014.18.7095
MA0017.11.64429
MA0019.10.394308
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.11.05513
MA0029.10.496599
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.10.567108
MA0041.10.140298
MA0042.10.131965
MA0043.10.644695
MA0046.10.58854
MA0048.10.558597
MA0050.10.219748
MA0051.10.309072
MA0052.10.574473
MA0055.10.0237024
MA0056.10
MA0057.11.4568
MA0058.10.401421
MA0059.10.421089
MA0060.10.404183
MA0061.10.218812
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.796531
MA0069.10.574784
MA0070.10.565924
MA0071.10.219128
MA0072.10.558195
MA0073.11.73991
MA0074.10.731206
MA0076.10.357911
MA0077.10.538513
MA0078.10.89286
MA0081.10.896655
MA0083.10.643958
MA0084.11.1979
MA0087.10.604077
MA0088.12.20031
MA0089.10
MA0090.10.167748
MA0091.10.200988
MA0092.10.167962
MA0093.10.653128
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.141127
MA0103.10.106139
MA0105.10.735427
MA0106.11.62537
MA0107.10.335745
MA0108.20.413973
MA0109.10
MA0111.10.525581
MA0113.10.855286
MA0114.10.215695
MA0115.10.647296
MA0116.10.288992
MA0117.10.617392
MA0119.10.141504
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.94327
MA0140.10.255562
MA0141.10.11774
MA0142.10.457961
MA0143.10.332773
MA0144.10.0609575
MA0145.10.584715
MA0146.17.14116
MA0147.11.31676
MA0148.10.203219
MA0149.10.144679
MA0062.21.11207
MA0035.20.259203
MA0039.26.97234
MA0138.20.383644
MA0002.20.957632
MA0137.20.116005
MA0104.21.02865
MA0047.20.301217
MA0112.24.3703
MA0065.21.51349
MA0150.10.53401
MA0151.10
MA0152.10.814717
MA0153.10.694211
MA0154.10.325394
MA0155.10.956246
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.911357
MA0160.10.205397
MA0161.10
MA0162.11.62941
MA0163.15.73617
MA0164.10.767642
MA0080.20.103116
MA0018.20.288261
MA0099.20.37828
MA0079.218.4909
MA0102.21.24942
MA0258.10.765596
MA0259.11.26238
MA0442.10
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