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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0

Latest revision as of 10:22, 17 September 2013


Full id: C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils



Phase1 CAGE Peaks

Hg19::chr10:106013923..106013945,+p2@GSTO1
Hg19::chr10:134143566..134143586,+p@chr10:134143566..134143586
+
Hg19::chr10:135106730..135106743,-p@chr10:135106730..135106743
-
Hg19::chr10:20107406..20107413,-p@chr10:20107406..20107413
-
Hg19::chr10:50396384..50396403,-p2@C10orf128
Hg19::chr10:50396407..50396424,-p3@C10orf128
Hg19::chr10:50396425..50396450,-p1@C10orf128
Hg19::chr10:5326456..5326474,-p@chr10:5326456..5326474
-
Hg19::chr10:5326485..5326513,-p@chr10:5326485..5326513
-
Hg19::chr10:81001828..81001846,+p@chr10:81001828..81001846
+
Hg19::chr10:81002081..81002137,+p@chr10:81002081..81002137
+
Hg19::chr10:81002418..81002443,+p@chr10:81002418..81002443
+
Hg19::chr10:81002444..81002451,+p@chr10:81002444..81002451
+
Hg19::chr10:81002459..81002470,+p@chr10:81002459..81002470
+
Hg19::chr10:81002490..81002499,+p@chr10:81002490..81002499
+
Hg19::chr10:81002562..81002621,+p@chr10:81002562..81002621
+
Hg19::chr10:81002638..81002652,+p@chr10:81002638..81002652
+
Hg19::chr10:81002662..81002681,+p@chr10:81002662..81002681
+
Hg19::chr10:81002783..81002848,+p@chr10:81002783..81002848
+
Hg19::chr10:81002901..81002909,+p@chr10:81002901..81002909
+
Hg19::chr10:81002927..81002938,+p14@ZMIZ1
Hg19::chr10:81028098..81028109,+p@chr10:81028098..81028109
+
Hg19::chr10:81028292..81028314,+p@chr10:81028292..81028314
+
Hg19::chr10:81030821..81030823,+p@chr10:81030821..81030823
+
Hg19::chr10:81034064..81034081,-p@chr10:81034064..81034081
-
Hg19::chr10:81036999..81037047,+p7@ZMIZ1
Hg19::chr10:81048292..81048324,+p@chr10:81048292..81048324
+
Hg19::chr10:81049531..81049547,+p@chr10:81049531..81049547
+
Hg19::chr10:81049616..81049623,+p@chr10:81049616..81049623
+
Hg19::chr10:81051907..81051935,+p@chr10:81051907..81051935
+
Hg19::chr10:81052746..81052768,+p@chr10:81052746..81052768
+
Hg19::chr10:81053101..81053113,+p@chr10:81053101..81053113
+
Hg19::chr10:81053128..81053171,+p@chr10:81053128..81053171
+
Hg19::chr10:81058206..81058225,+p@chr10:81058206..81058225
+
Hg19::chr10:81058659..81058670,+p@chr10:81058659..81058670
+
Hg19::chr10:81058684..81058709,+p@chr10:81058684..81058709
+
Hg19::chr10:81058729..81058759,+p@chr10:81058729..81058759
+
Hg19::chr10:81058831..81058838,+p@chr10:81058831..81058838
+
Hg19::chr10:81107216..81107237,+p1@PPIF
Hg19::chr10:81109447..81109460,+p4@PPIF
Hg19::chr10:81111293..81111304,+p@chr10:81111293..81111304
+
Hg19::chr10:81112062..81112114,+p@chr10:81112062..81112114
+
Hg19::chr10:81113608..81113707,+p@chr10:81113608..81113707
+
Hg19::chr10:81113718..81113778,+p@chr10:81113718..81113778
+
Hg19::chr10:81113959..81113978,+p@chr10:81113959..81113978
+
Hg19::chr11:121447503..121447533,+p9@SORL1
Hg19::chr11:121461068..121461086,+p13@SORL1
Hg19::chr11:124932986..124933018,+p2@SLC37A2
Hg19::chr11:46258933..46258943,+p@chr11:46258933..46258943
+
Hg19::chr11:61447622..61447639,+p3@DAGLA
Hg19::chr11:65150398..65150413,+p@chr11:65150398..65150413
+
Hg19::chr11:65780490..65780495,-p@chr11:65780490..65780495
-
Hg19::chr11:66384906..66384916,+p3@RBM14
Hg19::chr11:70172089..70172105,+p3@PPFIA1
Hg19::chr12:10320190..10320205,-p2@OLR1
Hg19::chr12:10339124..10339160,+p2@C12orf59
Hg19::chr12:125111152..125111184,+p@chr12:125111152..125111184
+
Hg19::chr12:48298765..48298783,-p2@VDR
Hg19::chr12:54767262..54767266,-p@chr12:54767262..54767266
-
Hg19::chr12:54778444..54778451,-p8@ZNF385A
Hg19::chr12:54783880..54783894,-p@chr12:54783880..54783894
-
Hg19::chr12:6658040..6658053,-p10@IFFO1
Hg19::chr12:6658208..6658243,-p5@IFFO1
Hg19::chr12:6659614..6659640,-p4@IFFO1
Hg19::chr12:6659665..6659674,-p9@IFFO1
Hg19::chr12:96588279..96588299,+p4@ELK3
Hg19::chr13:44453807..44453817,+p9@LACC1
Hg19::chr13:49144437..49144448,-p@chr13:49144437..49144448
-
Hg19::chr13:50202532..50202542,-p@chr13:50202532..50202542
-
Hg19::chr13:50202674..50202687,+p2@ARL11
Hg19::chr13:50216333..50216348,+p@chr13:50216333..50216348
+
Hg19::chr13:99127804..99127827,-p@chr13:99127804..99127827
-
Hg19::chr13:99127832..99127863,-p@chr13:99127832..99127863
-
Hg19::chr13:99965572..99965586,+p@chr13:99965572..99965586
+
Hg19::chr14:20943301..20943314,+p2@AF116670
Hg19::chr14:20943365..20943376,+p6@AF116670
Hg19::chr14:55602302..55602304,+p@chr14:55602302..55602304
+
Hg19::chr14:64971014..64971044,+p4@ZBTB1
Hg19::chr14:93099839..93099852,+p@chr14:93099839..93099852
+
Hg19::chr14:93099873..93099888,+p@chr14:93099873..93099888
+
Hg19::chr15:26029087..26029100,-p@chr15:26029087..26029100
-
Hg19::chr15:44085373..44085402,-p@chr15:44085373..44085402
-
Hg19::chr15:59980679..59980732,+p1@ENST00000560199
Hg19::chr15:75354653..75354657,+p@chr15:75354653..75354657
+
Hg19::chr15:90544013..90544051,+p@chr15:90544013..90544051
+
Hg19::chr15:90545434..90545449,+p9@ZNF710
Hg19::chr15:99993287..99993319,+p@chr15:99993287..99993319
+
Hg19::chr16:30727224..30727238,+p@chr16:30727224..30727238
+
Hg19::chr16:31370156..31370160,+p@chr16:31370156..31370160
+
Hg19::chr16:3639462..3639501,-p@chr16:3639462..3639501
-
Hg19::chr16:3639827..3639845,+p@chr16:3639827..3639845
+
Hg19::chr16:67144550..67144561,-p@chr16:67144550..67144561
-
Hg19::chr16:67144656..67144660,-p@chr16:67144656..67144660
-
Hg19::chr17:46080045..46080056,-p@chr17:46080045..46080056
-
Hg19::chr17:4643027..4643036,-p10@CXCL16
Hg19::chr17:47294661..47294681,+p@chr17:47294661..47294681
+
Hg19::chr17:4853442..4853471,+p5@ENO3
Hg19::chr17:57870826..57870837,+p@chr17:57870826..57870837
+
Hg19::chr17:60962303..60962306,+p@chr17:60962303..60962306
+
Hg19::chr17:72542140..72542151,-p5@CD300C
Hg19::chr17:72542163..72542182,-p2@CD300C
Hg19::chr17:73291973..73291990,+p@chr17:73291973..73291990
+
Hg19::chr17:73308280..73308291,-p@chr17:73308280..73308291
-
Hg19::chr17:73308311..73308326,-p@chr17:73308311..73308326
-
Hg19::chr17:74379267..74379297,+p4@SPHK1
Hg19::chr17:78835063..78835075,-p@chr17:78835063..78835075
-
Hg19::chr17:78866856..78866873,+p@chr17:78866856..78866873
+
Hg19::chr17:78866874..78866904,+p@chr17:78866874..78866904
+
Hg19::chr17:78866905..78866920,+p@chr17:78866905..78866920
+
Hg19::chr17:8124665..8124678,+p@chr17:8124665..8124678
+
Hg19::chr18:3449695..3449712,+p9@TGIF1
Hg19::chr18:3449720..3449749,+p2@TGIF1
Hg19::chr18:3449821..3449860,+p7@TGIF1
Hg19::chr19:11679245..11679256,-p@chr19:11679245..11679256
-
Hg19::chr19:11689066..11689084,-p@chr19:11689066..11689084
-
Hg19::chr19:11689256..11689267,+p@chr19:11689256..11689267
+
Hg19::chr19:11689281..11689296,+p@chr19:11689281..11689296
+
Hg19::chr19:11689297..11689311,+p@chr19:11689297..11689311
+
Hg19::chr19:11689518..11689533,-p9@ACP5
Hg19::chr19:11689547..11689564,-p6@ACP5
Hg19::chr19:11689913..11689921,+p@chr19:11689913..11689921
+
Hg19::chr19:11691549..11691554,-p@chr19:11691549..11691554
-
Hg19::chr19:12992190..12992203,-p4@DNASE2
Hg19::chr19:18284995..18285015,+p10@IFI30
Hg19::chr19:18288914..18288931,-p5@CU676849
p5@CU689079
Hg19::chr19:18291934..18291937,+p@chr19:18291934..18291937
+
Hg19::chr19:19051112..19051142,+p@chr19:19051112..19051142
+
Hg19::chr19:19064914..19064929,+p@chr19:19064914..19064929
+
Hg19::chr19:19496539..19496576,+p8@GATAD2A
Hg19::chr19:2271164..2271208,+p4@AF090094
Hg19::chr19:3136024..3136039,+p3@GNA15
Hg19::chr19:45240026..45240036,-p@chr19:45240026..45240036
-
Hg19::chr19:45245470..45245482,+p@chr19:45245470..45245482
+
Hg19::chr19:4553755..4553765,+p@chr19:4553755..4553765
+
Hg19::chr19:4553881..4553890,-p@chr19:4553881..4553890
-
Hg19::chr19:4553899..4553936,-p@chr19:4553899..4553936
-
Hg19::chr19:4553941..4554035,-p@chr19:4553941..4554035
-
Hg19::chr19:4554074..4554110,-p@chr19:4554074..4554110
-
Hg19::chr19:4554122..4554133,-p@chr19:4554122..4554133
-
Hg19::chr19:4554139..4554153,-p@chr19:4554139..4554153
-
Hg19::chr19:4554178..4554199,-p@chr19:4554178..4554199
-
Hg19::chr19:4554207..4554225,-p@chr19:4554207..4554225
-
Hg19::chr19:4554233..4554246,-p@chr19:4554233..4554246
-
Hg19::chr19:4554304..4554315,-p@chr19:4554304..4554315
-
Hg19::chr19:4554391..4554403,-p@chr19:4554391..4554403
-
Hg19::chr19:4555517..4555543,-p@chr19:4555517..4555543
-
Hg19::chr19:4557208..4557239,-p@chr19:4557208..4557239
-
Hg19::chr19:4559572..4559583,-p5@SEMA6B
Hg19::chr19:4559599..4559619,-p4@SEMA6B
Hg19::chr19:4559675..4559715,-p2@SEMA6B
Hg19::chr19:4559720..4559799,-p1@SEMA6B
Hg19::chr19:4559814..4559830,-p3@SEMA6B
Hg19::chr19:49377984..49378040,+p@chr19:49377984..49378040
+
Hg19::chr19:49465701..49465715,-p@chr19:49465701..49465715
-
Hg19::chr19:49469369..49469381,+p@chr19:49469369..49469381
+
Hg19::chr19:49469813..49469830,+p@chr19:49469813..49469830
+
Hg19::chr19:50432132..50432217,+p2@ATF5
Hg19::chr19:51631339..51631373,+p@chr19:51631339..51631373
+
Hg19::chr19:52264268..52264290,+p3@FPR2
Hg19::chr19:52307414..52307433,-p@chr19:52307414..52307433
-
Hg19::chr19:55385646..55385657,+p3@FCAR
Hg19::chr19:7556002..7556030,-p@chr19:7556002..7556030
-
Hg19::chr1:108592945..108592955,+p@chr1:108592945..108592955
+
Hg19::chr1:108593061..108593077,+p@chr1:108593061..108593077
+
Hg19::chr1:108593091..108593109,+p@chr1:108593091..108593109
+
Hg19::chr1:12252525..12252539,+p@chr1:12252525..12252539
+
Hg19::chr1:149901972..149901989,-p@chr1:149901972..149901989
-
Hg19::chr1:154422387..154422390,+p@chr1:154422387..154422390
+
Hg19::chr1:15479643..15479666,+p5@TMEM51
Hg19::chr1:155869427..155869441,-p@chr1:155869427..155869441
-
Hg19::chr1:181013908..181013945,+p@chr1:181013908..181013945
+
Hg19::chr1:212687665..212687673,+p@chr1:212687665..212687673
+
Hg19::chr1:244512513..244512546,+p@chr1:244512513..244512546
+
Hg19::chr1:244615163..244615196,-p2@ADSS
Hg19::chr1:25281902..25281921,+p@chr1:25281902..25281921
+
Hg19::chr1:25360722..25360754,+p@chr1:25360722..25360754
+
Hg19::chr1:25360757..25360774,+p@chr1:25360757..25360774
+
Hg19::chr1:25360780..25360795,+p@chr1:25360780..25360795
+
Hg19::chr1:25425897..25425914,-p@chr1:25425897..25425914
-
Hg19::chr1:27939332..27939345,-p@chr1:27939332..27939345
-
Hg19::chr1:45277688..45277721,+p@chr1:45277688..45277721
+
Hg19::chr20:2295693..2295700,-p@chr20:2295693..2295700
-
Hg19::chr20:25289627..25289655,-p@chr20:25289627..25289655
-
Hg19::chr20:48807648..48807671,+p9@CEBPB
Hg19::chr20:48876519..48876531,-p@chr20:48876519..48876531
-
Hg19::chr20:48909224..48909237,-p@chr20:48909224..48909237
-
Hg19::chr20:5054058..5054064,-p@chr20:5054058..5054064
-
Hg19::chr20:5070979..5071001,-p@chr20:5070979..5071001
-
Hg19::chr20:61192950..61192968,+p@chr20:61192950..61192968
+
Hg19::chr20:632324..632328,-p@chr20:632324..632328
-
Hg19::chr21:30565627..30565638,+p4@LINC00189
Hg19::chr21:30565654..30565682,+p2@LINC00189
Hg19::chr21:36259830..36259842,-p30@RUNX1
Hg19::chr22:35719490..35719507,+p5@TOM1
Hg19::chr22:35785133..35785148,+p@chr22:35785133..35785148
+
Hg19::chr22:46998103..46998127,-p@chr22:46998103..46998127
-
Hg19::chr2:119731876..119731935,+p@chr2:119731876..119731935
+
Hg19::chr2:158732905..158732920,-p@chr2:158732905..158732920
-
Hg19::chr2:169907514..169907530,+p@chr2:169907514..169907530
+
Hg19::chr2:169907540..169907551,+p@chr2:169907540..169907551
+
Hg19::chr2:169926127..169926143,+p2@DHRS9
Hg19::chr2:169926149..169926160,+p4@DHRS9
Hg19::chr2:198002072..198002083,-p@chr2:198002072..198002083
-
Hg19::chr2:218766698..218766769,-p5@TNS1
Hg19::chr2:219246728..219246739,+p6@SLC11A1
Hg19::chr2:219246746..219246759,+p5@SLC11A1
Hg19::chr2:219248811..219248852,+p8@SLC11A1
Hg19::chr2:219613974..219613992,+p@chr2:219613974..219613992
+
Hg19::chr2:230058497..230058500,-p@chr2:230058497..230058500
-
Hg19::chr2:230200207..230200230,+p@chr2:230200207..230200230
+
Hg19::chr2:241564655..241564668,+p3@GPR35
Hg19::chr2:241564889..241564932,+p1@GPR35
Hg19::chr2:241564946..241564955,+p5@GPR35
Hg19::chr2:58273760..58273846,+p2@VRK2
Hg19::chr2:58273887..58273898,+p5@VRK2
Hg19::chr2:58274320..58274344,+p@chr2:58274320..58274344
+
Hg19::chr2:58378901..58378906,+p@chr2:58378901..58378906
+
Hg19::chr2:91960539..91960551,+p@chr2:91960539..91960551
+
Hg19::chr2:91960553..91960566,+p@chr2:91960553..91960566
+
Hg19::chr3:192635973..192635996,-p2@MB21D2
Hg19::chr3:196065277..196065288,-p5@TM4SF19
Hg19::chr3:196065302..196065322,-p2@TM4SF19
Hg19::chr3:196065414..196065425,-p3@TM4SF19
Hg19::chr3:48603225..48603242,-p8@COL7A1
Hg19::chr3:48603660..48603676,-p@chr3:48603660..48603676
-
Hg19::chr3:52529994..52530017,+p@chr3:52529994..52530017
+
Hg19::chr3:98501953..98501955,+p7@ST3GAL6
Hg19::chr4:159092769..159092780,-p12@FAM198B
Hg19::chr4:185314233..185314269,-p@chr4:185314233..185314269
-
Hg19::chr4:2418461..2418476,+p@chr4:2418461..2418476
+
Hg19::chr4:2796691..2796709,+p@chr4:2796691..2796709
+
Hg19::chr4:2826871..2826888,+p11@SH3BP2
Hg19::chr4:681242..681274,+p@chr4:681242..681274
+
Hg19::chr4:84255980..84256009,-p1@HPSE
Hg19::chr5:131279764..131279771,-p@chr5:131279764..131279771
-
Hg19::chr5:135382258..135382274,+p29@TGFBI
Hg19::chr5:135382287..135382307,+p24@TGFBI
Hg19::chr5:135402548..135402562,+p@chr5:135402548..135402562
+
Hg19::chr5:156534012..156534066,-p10@HAVCR2
Hg19::chr5:169697858..169697883,-p@chr5:169697858..169697883
-
Hg19::chr5:177820148..177820162,-p@chr5:177820148..177820162
-
Hg19::chr5:180221221..180221227,-p@chr5:180221221..180221227
-
Hg19::chr5:180242534..180242560,-p7@MGAT1
Hg19::chr5:180245123..180245153,+p@chr5:180245123..180245153
+
Hg19::chr5:180258559..180258573,-p2@uc003mmj.1
Hg19::chr5:77805957..77805964,-p13@LHFPL2
Hg19::chr5:77806048..77806055,-p17@LHFPL2
Hg19::chr5:77806142..77806156,-p8@LHFPL2
Hg19::chr5:77806166..77806224,-p2@LHFPL2
Hg19::chr5:95158644..95158657,-p3@GLRX
Hg19::chr6:106535656..106535682,+p10@PRDM1
Hg19::chr6:106535687..106535706,+p8@PRDM1
Hg19::chr6:106535874..106535878,+p12@PRDM1
Hg19::chr6:106547367..106547394,+p@chr6:106547367..106547394
+
Hg19::chr6:106552921..106552933,+p@chr6:106552921..106552933
+
Hg19::chr6:116761121..116761127,+p@chr6:116761121..116761127
+
Hg19::chr6:15533961..15533988,-p8@DTNBP1
Hg19::chr6:15534018..15534039,-p7@DTNBP1
Hg19::chr6:166671395..166671415,-p@chr6:166671395..166671415
-
Hg19::chr6:29932741..29932763,-p@chr6:29932741..29932763
-
Hg19::chr6:6713323..6713329,-p@chr6:6713323..6713329
-
Hg19::chr7:141363135..141363146,+p@chr7:141363135..141363146
+
Hg19::chr7:151330150..151330157,-p29@PRKAG2
Hg19::chr7:151330169..151330179,-p20@PRKAG2
Hg19::chr7:151330181..151330212,-p3@PRKAG2
Hg19::chr7:151330218..151330259,-p6@PRKAG2
Hg19::chr7:151433703..151433708,+p@chr7:151433703..151433708
+
Hg19::chr7:2832799..2832806,+p@chr7:2832799..2832806
+
Hg19::chr7:39720934..39720937,+p@chr7:39720934..39720937
+
Hg19::chr9:115950834..115950848,-p6@FKBP15
Hg19::chr9:132101645..132101659,+p@chr9:132101645..132101659
+
Hg19::chr9:132106032..132106042,-p@chr9:132106032..132106042
-
Hg19::chr9:134530818..134530849,-p@chr9:134530818..134530849
-
Hg19::chr9:137264942..137264963,+p@chr9:137264942..137264963
+
Hg19::chr9:137264970..137264982,+p@chr9:137264970..137264982
+
Hg19::chrX:150565253..150565267,+p3@VMA21
Hg19::chrX:153286067..153286101,-p@chrX:153286067..153286101
-
Hg19::chrX:47436888..47436926,-p@chrX:47436888..47436926
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0044464cell part0.0110169370410131
GO:0006357regulation of transcription from RNA polymerase II promoter0.0110169370410131
GO:0006366transcription from RNA polymerase II promoter0.0110169370410131
GO:0048523negative regulation of cellular process0.0110169370410131
GO:0048519negative regulation of biological process0.0110169370410131
GO:0016481negative regulation of transcription0.0110169370410131
GO:0030228lipoprotein receptor activity0.0110169370410131
GO:0005041low-density lipoprotein receptor activity0.0110169370410131
GO:0045934negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0110169370410131
GO:0045766positive regulation of angiogenesis0.0110169370410131
GO:0009887organ morphogenesis0.0157805697684688
GO:0005764lysosome0.0157805697684688
GO:0000323lytic vacuole0.0157805697684688
GO:0030169low-density lipoprotein binding0.0157805697684688
GO:0031324negative regulation of cellular metabolic process0.0157805697684688
GO:0016564transcription repressor activity0.0160788228917869
GO:0030674protein binding, bridging0.0167097573713658
GO:0005773vacuole0.0196882745563289
GO:0009892negative regulation of metabolic process0.0227931743814195
GO:0003714transcription corepressor activity0.0227931743814195
GO:0016021integral to membrane0.0242153939333534
GO:0031224intrinsic to membrane0.025159992169453
GO:0044425membrane part0.0265856287196721
GO:0008034lipoprotein binding0.0277528664170359
GO:0044262cellular carbohydrate metabolic process0.0301222065828673
GO:0001525angiogenesis0.0301222065828673
GO:0003712transcription cofactor activity0.0308865182260587
GO:0006167AMP biosynthetic process0.0308865182260587
GO:0016656monodehydroascorbate reductase (NADH) activity0.0308865182260587
GO:0030852regulation of granulocyte differentiation0.0308865182260587
GO:0030854positive regulation of granulocyte differentiation0.0308865182260587
GO:0005590collagen type VII0.0308865182260587
GO:0008434vitamin D3 receptor activity0.0308865182260587
GO:0005737cytoplasm0.0308865182260587
GO:0005515protein binding0.0308865182260587
GO:0048514blood vessel morphogenesis0.0308865182260587
GO:0045765regulation of angiogenesis0.0308865182260587
GO:0048646anatomical structure formation0.0335991407795975
GO:0006898receptor-mediated endocytosis0.0340752893108384
GO:0001568blood vessel development0.0378963848122442
GO:0001944vasculature development0.0378963848122442
GO:0003700transcription factor activity0.0378963848122442
GO:0006916anti-apoptosis0.0378963848122442
GO:0043565sequence-specific DNA binding0.0378963848122442
GO:0016020membrane0.0378963848122442
GO:0006670sphingosine metabolic process0.0378963848122442
GO:0032422purine-rich negative regulatory element binding0.0378963848122442
GO:0016889endodeoxyribonuclease activity, producing 3'-phosphomonoesters0.0378963848122442
GO:0046033AMP metabolic process0.0378963848122442
GO:0004531deoxyribonuclease II activity0.0378963848122442
GO:0008481sphinganine kinase activity0.0378963848122442
GO:0035238vitamin A biosynthetic process0.0378963848122442
GO:0042362fat-soluble vitamin biosynthetic process0.0378963848122442
GO:0019862IgA binding0.0378963848122442
GO:00429059-cis-retinoic acid metabolic process0.0378963848122442
GO:00429049-cis-retinoic acid biosynthetic process0.0378963848122442
GO:00470353-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity0.0378963848122442
GO:0009605response to external stimulus0.0386290112645299
GO:0006629lipid metabolic process0.0427264398054781
GO:0010324membrane invagination0.0427264398054781
GO:0006897endocytosis0.0427264398054781
GO:0045892negative regulation of transcription, DNA-dependent0.045600196476447
GO:0005624membrane fraction0.045600196476447
GO:0005667transcription factor complex0.045600196476447
GO:0009611response to wounding0.045600196476447
GO:0015038glutathione disulfide oxidoreductase activity0.045600196476447
GO:0017050D-erythro-sphingosine kinase activity0.045600196476447
GO:0004566beta-glucuronidase activity0.045600196476447
GO:0004019adenylosuccinate synthase activity0.045600196476447
GO:0007207muscarinic acetylcholine receptor, phospholipase C activating pathway0.045600196476447
GO:0015037peptide disulfide oxidoreductase activity0.045600196476447
GO:0006355regulation of transcription, DNA-dependent0.0460205566465812
GO:0008134transcription factor binding0.0460205566465812
GO:0008202steroid metabolic process0.0484657614488581
GO:0006066alcohol metabolic process0.0484657614488581
GO:0044424intracellular part0.0484657614488581
GO:0000287magnesium ion binding0.0484657614488581
GO:0043066negative regulation of apoptosis0.0484657614488581
GO:0044451nucleoplasm part0.0484657614488581
GO:0043069negative regulation of programmed cell death0.0484657614488581
GO:0009653anatomical structure morphogenesis0.0484657614488581
GO:0048247lymphocyte chemotaxis0.0484657614488581
GO:0001892embryonic placenta development0.0484657614488581
GO:0031958corticosteroid receptor signaling pathway0.0484657614488581
GO:0009249protein lipoylation0.0484657614488581
GO:0042448progesterone metabolic process0.0484657614488581
GO:0030851granulocyte differentiation0.0484657614488581
GO:0045987positive regulation of smooth muscle contraction0.0484657614488581
GO:0042921glucocorticoid receptor signaling pathway0.0484657614488581
GO:0006351transcription, DNA-dependent0.0486981554268126
GO:0032774RNA biosynthetic process0.0489477032778742



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
defensive cell9.47e-12348
phagocyte9.47e-12348
classical monocyte2.32e-11642
CD14-positive, CD16-negative classical monocyte2.32e-11642
macrophage dendritic cell progenitor4.24e-11161
monopoietic cell3.38e-11059
monocyte3.38e-11059
monoblast3.38e-11059
promonocyte3.38e-11059
myeloid leukocyte2.27e-10172
granulocyte monocyte progenitor cell2.68e-10067
myeloid lineage restricted progenitor cell1.63e-9766
myeloid cell5.88e-67108
common myeloid progenitor5.88e-67108
stuff accumulating cell7.02e-6387
nongranular leukocyte2.50e-59115
leukocyte4.88e-58136
hematopoietic lineage restricted progenitor cell2.14e-51120
hematopoietic stem cell8.96e-45168
angioblastic mesenchymal cell8.96e-45168
hematopoietic cell6.68e-42177
hematopoietic oligopotent progenitor cell3.24e-41161
hematopoietic multipotent progenitor cell3.24e-41161
mesenchymal cell5.56e-15354
connective tissue cell1.85e-14361
motile cell1.29e-12386
intermediate monocyte2.58e-129
CD14-positive, CD16-positive monocyte2.58e-129
basophil1.85e-103
multi fate stem cell2.29e-10427
single nucleate cell4.58e-103
mononuclear cell4.58e-103
somatic stem cell4.66e-10433
stem cell1.17e-09441
macrophage9.76e-096
Uber Anatomy
Ontology termp-valuen
bone marrow2.99e-8776
hematopoietic system4.74e-8198
blood island4.74e-8198
bone element4.00e-8082
immune system1.08e-7593
hemolymphoid system1.58e-72108
skeletal element4.40e-7290
skeletal system8.02e-64100
musculoskeletal system7.73e-34167
lateral plate mesoderm3.35e-33203
mesoderm3.72e-18315
mesoderm-derived structure3.72e-18315
presumptive mesoderm3.72e-18315
connective tissue1.44e-14371


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.00341616
MA0004.10.136308
MA0006.10.615698
MA0007.10.49221
MA0009.10.185883
MA0014.10.048826
MA0017.11.72651
MA0019.11.08189
MA0024.10.00132215
MA0025.10.0176504
MA0027.11.01251
MA0028.10.00196914
MA0029.10.0395448
MA0030.10.0871599
MA0031.10.298412
MA0038.10.0305922
MA0040.10.336246
MA0041.10.0249421
MA0042.10.0707354
MA0043.10.0282791
MA0046.10.0254411
MA0048.11.24919
MA0050.10.231568
MA0051.10.448256
MA0052.10.0435743
MA0055.11.07547
MA0056.10
MA0057.10.894905
MA0058.10.11631
MA0059.10.0314371
MA0060.14.69668e-07
MA0061.10.348071
MA0063.10
MA0066.10.243421
MA0067.10.212227
MA0068.10.580737
MA0069.10.495428
MA0070.10.690853
MA0071.11.06733
MA0072.10.0209829
MA0073.11.57162
MA0074.11.13572
MA0076.10.00182584
MA0077.10.0618129
MA0078.11.2059
MA0081.12.36995
MA0083.10.0302144
MA0084.10.133131
MA0087.10.0647174
MA0088.11.56761
MA0089.10
MA0090.10.826065
MA0091.10.766149
MA0092.10.780775
MA0093.10.220174
MA0095.10
MA0098.10
MA0100.10.0718473
MA0101.10.0101032
MA0103.10.535516
MA0105.11.31436
MA0106.10.256899
MA0107.10.071054
MA0108.20.0439637
MA0109.10
MA0111.11.11922
MA0113.10.202241
MA0114.10.952441
MA0115.10.343864
MA0116.11.37092
MA0117.10.645855
MA0119.11.45802
MA0122.10.473434
MA0124.10.119224
MA0125.10.362298
MA0130.10
MA0131.10.138115
MA0132.10
MA0133.10
MA0135.10.0369685
MA0136.11.47273
MA0139.10.0594135
MA0140.10.0142154
MA0141.11.47088
MA0142.10.0710722
MA0143.10.302436
MA0144.12.65015
MA0145.10.510198
MA0146.11.02385
MA0147.10.155756
MA0148.10.195219
MA0149.10.273182
MA0062.20.300784
MA0035.20.00589347
MA0039.20.56516
MA0138.20.977295
MA0002.22.34111
MA0137.21.84933
MA0104.20.0625892
MA0047.20.601561
MA0112.24.36946
MA0065.21.86068
MA0150.17.34109
MA0151.10
MA0152.10.576644
MA0153.10.0630718
MA0154.15.4873
MA0155.12.35746
MA0156.11.32162
MA0157.10.589878
MA0158.10
MA0159.10.766242
MA0160.10.713978
MA0161.10
MA0162.10.0122523
MA0163.10.288311
MA0164.10.634487
MA0080.27.42402
MA0018.20.372868
MA0099.26.96125
MA0079.20.0311777
MA0102.20.151897
MA0258.11.21566
MA0259.10.0573827
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
EBF1#1879481.537807225306880.001719076307599130.0106601716238776
ESR1#2099192.10289015333430.002095497422132370.012120716397324
FOS#2353571.844904505780513.92048656211706e-060.000127555045501852
FOSL1#8061223.142801272518732.94797947448122e-060.000101011820319995
FOSL2#2355271.644300058716420.008136523413026520.0321322834732314
JUN#3725401.8004070780340.0002263262055307780.00249733571890427
JUND#3727561.408997053038770.004749770540672650.0223259951166709
MAFK#7975222.144662334648410.0007407595719795370.00583484342242785
MAX#4149651.508691036278640.0003732224096266710.0037101632628022
NFE2#4778102.777131678116150.003737307941752490.0186248367671274
SPI1#6688692.036324899597375.5508121718546e-094.42535322455208e-07



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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