Personal tools

Coexpression cluster:C34: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0,0

Latest revision as of 10:13, 17 September 2013


Full id: C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile



Phase1 CAGE Peaks

Hg19::chr10:120530382..120530392,-p@chr10:120530382..120530392
-
Hg19::chr10:123748653..123748685,+p8@TACC2
Hg19::chr10:123748702..123748715,+p23@TACC2
Hg19::chr10:123748770..123748780,+p30@TACC2
Hg19::chr10:124214164..124214184,+p1@ARMS2
Hg19::chr10:127591732..127591739,-p@chr10:127591732..127591739
-
Hg19::chr10:127758470..127758483,-p@chr10:127758470..127758483
-
Hg19::chr10:127760193..127760229,-p@chr10:127760193..127760229
-
Hg19::chr10:127775217..127775220,-p@chr10:127775217..127775220
-
Hg19::chr10:127882844..127882847,-p@chr10:127882844..127882847
-
Hg19::chr10:128072961..128072980,-p@chr10:128072961..128072980
-
Hg19::chr10:128076939..128076955,-p4@ADAM12
Hg19::chr10:128076983..128076990,-p6@ADAM12
Hg19::chr10:128077034..128077055,-p1@ADAM12
Hg19::chr10:128077058..128077071,-p2@ADAM12
Hg19::chr10:128112613..128112622,+p@chr10:128112613..128112622
+
Hg19::chr10:128112659..128112668,+p@chr10:128112659..128112668
+
Hg19::chr10:128112692..128112702,+p@chr10:128112692..128112702
+
Hg19::chr10:52339649..52339671,-p@chr10:52339649..52339671
-
Hg19::chr10:61899124..61899143,-p41@ANK3
Hg19::chr10:61900762..61900779,-p6@ANK3
Hg19::chr10:62761188..62761212,-p3@RHOBTB1
Hg19::chr10:79617058..79617076,-p@chr10:79617058..79617076
-
Hg19::chr10:81932771..81932781,-p31@ANXA11
Hg19::chr10:81932800..81932811,-p30@ANXA11
Hg19::chr10:97471508..97471529,+p6@ENTPD1
Hg19::chr11:108464403..108464414,-p7@EXPH5
Hg19::chr11:122293549..122293583,-p2@ENST00000526674
Hg19::chr11:123362263..123362276,+p@chr11:123362263..123362276
+
Hg19::chr11:126276070..126276081,+p19@ST3GAL4
Hg19::chr11:126276627..126276642,+p18@ST3GAL4
Hg19::chr11:126276649..126276650,+p27@ST3GAL4
Hg19::chr11:126276655..126276671,+p16@ST3GAL4
Hg19::chr11:19545592..19545601,-p1@NAV2-AS4
Hg19::chr11:19545717..19545722,-p2@NAV2-AS4
Hg19::chr11:1955074..1955089,+p9@TNNT3
Hg19::chr11:27406931..27406973,-p7@LGR4
Hg19::chr11:33744198..33744239,-p6@CD59
Hg19::chr11:33744262..33744283,-p5@CD59
Hg19::chr11:33744487..33744508,-p7@CD59
Hg19::chr11:33891865..33891903,-p17@LMO2
Hg19::chr11:64323396..64323421,+p1@SLC22A11
Hg19::chr11:64323428..64323437,+p3@SLC22A11
Hg19::chr11:73844537..73844555,-p22@C2CD3
Hg19::chr11:73844693..73844711,-p16@C2CD3
Hg19::chr11:77261551..77261558,+p@chr11:77261551..77261558
+
Hg19::chr12:120724652..120724670,-p@chr12:120724652..120724670
-
Hg19::chr12:12618256..12618266,+p@chr12:12618256..12618266
+
Hg19::chr12:12618275..12618283,+p@chr12:12618275..12618283
+
Hg19::chr12:48119219..48119230,-p3@ENDOU
Hg19::chr12:48119301..48119329,-p2@ENDOU
Hg19::chr12:48119340..48119350,-p5@ENDOU
Hg19::chr12:56091860..56091863,+p@chr12:56091860..56091863
+
Hg19::chr13:103356647..103356655,-p1@METTL21C
Hg19::chr13:34295179..34295187,-p@chr13:34295179..34295187
-
Hg19::chr13:38183557..38183568,-p7@POSTN
Hg19::chr13:98085365..98085368,-p@chr13:98085365..98085368
-
Hg19::chr14:106069247..106069296,-p1@ENST00000479229
Hg19::chr14:106176508..106176542,-p2@BC098451
Hg19::chr14:106176868..106176876,-p5@BC098451
Hg19::chr14:106176908..106176916,-p3@BC098451
Hg19::chr14:23598960..23598982,-p12@SLC7A8
Hg19::chr14:23598991..23599001,-p31@SLC7A8
Hg19::chr14:23599014..23599021,-p37@SLC7A8
Hg19::chr14:67707543..67707570,+p20@MPP5
Hg19::chr14:98152812..98152821,-p2@ENST00000556163
Hg19::chr14:98152946..98152982,-p1@ENST00000556163
Hg19::chr15:101579798..101579803,-p@chr15:101579798..101579803
-
Hg19::chr15:51502571..51502580,-p@chr15:51502571..51502580
-
Hg19::chr15:51510798..51510821,-p10@CYP19A1
Hg19::chr15:51514604..51514624,-p3@CYP19A1
Hg19::chr15:51529173..51529191,-p7@CYP19A1
Hg19::chr15:51535135..51535152,-p5@CYP19A1
Hg19::chr15:51607569..51607593,-p@chr15:51607569..51607593
-
Hg19::chr15:51622711..51622719,-p@chr15:51622711..51622719
-
Hg19::chr15:51622745..51622750,-p@chr15:51622745..51622750
-
Hg19::chr15:51623258..51623265,-p@chr15:51623258..51623265
-
Hg19::chr15:51630785..51630804,-p1@CYP19A1
Hg19::chr15:51630909..51630911,-p15@CYP19A1
Hg19::chr15:51652418..51652421,+p9@GLDN
Hg19::chr15:51652429..51652443,+p4@GLDN
Hg19::chr15:72252289..72252301,-p@chr15:72252289..72252301
-
Hg19::chr15:72252309..72252319,-p@chr15:72252309..72252319
-
Hg19::chr15:72252333..72252336,-p@chr15:72252333..72252336
-
Hg19::chr15:72264531..72264550,+p@chr15:72264531..72264550
+
Hg19::chr15:74657802..74657829,+p@chr15:74657802..74657829
+
Hg19::chr15:74658525..74658558,-p2@CYP11A1
Hg19::chr15:74659516..74659520,-p@chr15:74659516..74659520
-
Hg19::chr15:74660180..74660225,-p5@CYP11A1
Hg19::chr15:74661578..74661583,-p@chr15:74661578..74661583
-
Hg19::chr15:85401701..85401719,+p@chr15:85401701..85401719
+
Hg19::chr16:25160253..25160271,-p1@LOC100506655
Hg19::chr16:25160277..25160292,-p3@LOC100506655
Hg19::chr16:25160300..25160305,-p6@LOC100506655
Hg19::chr16:25160321..25160330,-p4@LOC100506655
Hg19::chr16:25160345..25160360,-p2@LOC100506655
Hg19::chr16:25160366..25160371,-p8@LOC100506655
Hg19::chr16:26968231..26968235,-p@chr16:26968231..26968235
-
Hg19::chr16:30679138..30679144,+p53@FBRS
Hg19::chr16:30679159..30679166,+p56@FBRS
Hg19::chr16:57679941..57679944,+p@chr16:57679941..57679944
+
Hg19::chr16:57679945..57679960,+p@chr16:57679945..57679960
+
Hg19::chr16:57679972..57679994,+p@chr16:57679972..57679994
+
Hg19::chr16:57680005..57680018,+p@chr16:57680005..57680018
+
Hg19::chr16:57680043..57680054,+p@chr16:57680043..57680054
+
Hg19::chr16:57680065..57680076,+p@chr16:57680065..57680076
+
Hg19::chr16:57680095..57680109,+p@chr16:57680095..57680109
+
Hg19::chr16:57680128..57680139,+p@chr16:57680128..57680139
+
Hg19::chr16:58247281..58247316,-p@chr16:58247281..58247316
-
Hg19::chr16:67731566..67731570,+p@chr16:67731566..67731570
+
Hg19::chr16:80673718..80673729,-p@chr16:80673718..80673729
-
Hg19::chr16:89970546..89970557,+p10@TCF25
Hg19::chr17:1508450..1508458,-p18@SLC43A2
Hg19::chr17:27575223..27575224,-p@chr17:27575223..27575224
-
Hg19::chr17:2908564..2908573,+p@chr17:2908564..2908573
+
Hg19::chr17:34221274..34221279,-p@chr17:34221274..34221279
-
Hg19::chr17:40698022..40698026,-p@chr17:40698022..40698026
-
Hg19::chr17:40698768..40698773,+p1@HSD17B1P1
Hg19::chr17:40704938..40704943,+p1@HSD17B1
Hg19::chr17:4938712..4938733,-p1@GPR172B
Hg19::chr17:49825260..49825274,-p8@CA10
Hg19::chr17:53396302..53396319,+p@chr17:53396302..53396319
+
Hg19::chr17:56591321..56591332,-p@chr17:56591321..56591332
-
Hg19::chr17:61949433..61949442,-p@chr17:61949433..61949442
-
Hg19::chr17:61950617..61950645,-p1@CSH2
Hg19::chr17:61958754..61958765,-p4@GH2
Hg19::chr17:61959284..61959322,-p1@GH2
Hg19::chr17:61959323..61959338,-p2@GH2
Hg19::chr17:61959417..61959445,-p3@GH2
Hg19::chr17:61972342..61972370,+p1@CU675186
p1@CU678143
p1@CU691219
Hg19::chr17:61972373..61972412,-p2@CSH1
Hg19::chr17:61973889..61973921,-p1@CSH1
Hg19::chr17:61988610..61988623,-p1@CSHL1
Hg19::chr17:67586134..67586137,+p2@uc002jil.2
Hg19::chr17:67601764..67601792,-p@chr17:67601764..67601792
-
Hg19::chr18:48533693..48533694,+p@chr18:48533693..48533694
+
Hg19::chr19:2823778..2823783,-p@chr19:2823778..2823783
-
Hg19::chr19:36757642..36757645,+p@chr19:36757642..36757645
+
Hg19::chr19:40093154..40093171,+p1@LGALS13
Hg19::chr19:40093173..40093182,+p2@LGALS13
Hg19::chr19:40194964..40194986,+p3@LGALS14
Hg19::chr19:40194992..40195006,+p4@LGALS14
Hg19::chr19:40195084..40195100,+p2@LGALS14
Hg19::chr19:40195101..40195131,+p1@LGALS14
Hg19::chr19:4233171..4233178,+p@chr19:4233171..4233178
+
Hg19::chr19:43099070..43099086,-p2@CEACAM8
Hg19::chr19:43099109..43099112,-p3@CEACAM8
Hg19::chr19:43137279..43137290,-p1@CEACAMP1
Hg19::chr19:43237082..43237096,-p@chr19:43237082..43237096
-
Hg19::chr19:43237180..43237205,-p@chr19:43237180..43237205
-
Hg19::chr19:43242904..43242911,-p@chr19:43242904..43242911
-
Hg19::chr19:43242912..43242918,-p@chr19:43242912..43242918
-
Hg19::chr19:43243151..43243159,+p@chr19:43243151..43243159
+
Hg19::chr19:43244610..43244652,-p1@PSG3
Hg19::chr19:43269809..43269838,-p1@PSG8
Hg19::chr19:43370696..43370711,-p@chr19:43370696..43370711
-
Hg19::chr19:43372361..43372372,-p@chr19:43372361..43372372
-
Hg19::chr19:43376047..43376088,-p@chr19:43376047..43376088
-
Hg19::chr19:43376124..43376142,-p@chr19:43376124..43376142
-
Hg19::chr19:43382109..43382118,-p@chr19:43382109..43382118
-
Hg19::chr19:43382142..43382150,-p@chr19:43382142..43382150
-
Hg19::chr19:43383753..43383765,-p4@PSG1
Hg19::chr19:43383789..43383804,-p3@PSG1
Hg19::chr19:43383824..43383841,-p2@PSG1
Hg19::chr19:43383856..43383876,-p1@PSG1
Hg19::chr19:43420307..43420323,-p@chr19:43420307..43420323
-
Hg19::chr19:43422000..43422015,-p4@PSG6
Hg19::chr19:43422019..43422057,-p1@PSG6
Hg19::chr19:43422063..43422086,-p3@PSG6
Hg19::chr19:43441291..43441330,-p1@PSG7
Hg19::chr19:43441355..43441366,-p2@PSG7
Hg19::chr19:43530605..43530640,-p1@PSG11
p2@PSG6
Hg19::chr19:43530643..43530668,-p2@PSG11
Hg19::chr19:43576049..43576055,-p3@PSG2
Hg19::chr19:43576091..43576105,-p2@PSG2
Hg19::chr19:43586845..43586863,-p1@PSG2
Hg19::chr19:43698587..43698607,-p3@PSG4
Hg19::chr19:43698658..43698695,-p6@PSG4
Hg19::chr19:43702360..43702371,-p8@PSG4
Hg19::chr19:43708254..43708276,-p7@PSG4
Hg19::chr19:43708353..43708373,+p@chr19:43708353..43708373
+
Hg19::chr19:43708378..43708400,-p5@PSG4
Hg19::chr19:43709748..43709760,-p2@PSG4
Hg19::chr19:43709772..43709796,-p1@PSG4
Hg19::chr19:43709817..43709825,-p4@PSG4
Hg19::chr19:43772149..43772159,-p1@M31126
Hg19::chr19:43772273..43772297,-p2@PSG9
Hg19::chr19:43773641..43773691,-p1@PSG9
Hg19::chr19:50764206..50764209,-p@chr19:50764206..50764209
-
Hg19::chr19:52780870..52780890,-p@chr19:52780870..52780890
-
Hg19::chr19:53515520..53515523,+p@chr19:53515520..53515523
+
Hg19::chr19:53547983..53547999,+p1@ERVV-2
Hg19::chr19:55587266..55587275,+p8@EPS8L1
Hg19::chr19:58162838..58162849,+p@chr19:58162838..58162849
+
Hg19::chr19:58162872..58162889,+p@chr19:58162872..58162889
+
Hg19::chr19:6217025..6217041,-p@chr19:6217025..6217041
-
Hg19::chr1:111147947..111147950,-p@chr1:111147947..111147950
-
Hg19::chr1:117910132..117910146,+p3@MAN1A2
Hg19::chr1:120053377..120053380,+p@chr1:120053377..120053380
+
Hg19::chr1:152081101..152081106,-p@chr1:152081101..152081106
-
Hg19::chr1:152081116..152081126,-p@chr1:152081116..152081126
-
Hg19::chr1:152081127..152081142,-p@chr1:152081127..152081142
-
Hg19::chr1:152081151..152081155,-p@chr1:152081151..152081155
-
Hg19::chr1:165864783..165864796,+p8@UCK2
Hg19::chr1:165864800..165864818,+p9@UCK2
Hg19::chr1:176524606..176524624,+p4@PAPPA2
Hg19::chr1:176533873..176533878,+p@chr1:176533873..176533878
+
Hg19::chr1:176668526..176668531,+p@chr1:176668526..176668531
+
Hg19::chr1:197189060..197189096,-p@chr1:197189060..197189096
-
Hg19::chr1:198796822..198796828,-p1@ENST00000412162
Hg19::chr1:203071336..203071357,+p@chr1:203071336..203071357
+
Hg19::chr1:2036149..2036162,+p4@PRKCZ
Hg19::chr1:204159492..204159541,-p@chr1:204159492..204159541
-
Hg19::chr1:204159816..204159828,-p@chr1:204159816..204159828
-
Hg19::chr1:204165610..204165626,-p1@KISS1
Hg19::chr1:204165736..204165747,-p3@KISS1
Hg19::chr1:204165751..204165766,-p2@KISS1
Hg19::chr1:204283814..204283840,-p@chr1:204283814..204283840
-
Hg19::chr1:245270498..245270509,+p16@EFCAB2
Hg19::chr1:26331036..26331074,-p@chr1:26331036..26331074
-
Hg19::chr1:26331096..26331111,-p@chr1:26331096..26331111
-
Hg19::chr1:26371399..26371408,+p@chr1:26371399..26371408
+
Hg19::chr1:26373174..26373185,-p@chr1:26373174..26373185
-
Hg19::chr1:36820204..36820221,-p17@STK40
Hg19::chr1:40462430..40462433,+p@chr1:40462430..40462433
+
Hg19::chr1:42630460..42630471,-p2@GUCA2A
Hg19::chr1:56591117..56591122,-p@chr1:56591117..56591122
-
Hg19::chr1:56591129..56591137,-p@chr1:56591129..56591137
-
Hg19::chr1:56591155..56591166,-p@chr1:56591155..56591166
-
Hg19::chr1:56680724..56680755,-p@chr1:56680724..56680755
-
Hg19::chr1:95884651..95884654,-p@chr1:95884651..95884654
-
Hg19::chr20:12988573..12988584,+p@chr20:12988573..12988584
+
Hg19::chr20:12989735..12989746,+p8@SPTLC3
Hg19::chr20:12989840..12989866,+p2@SPTLC3
Hg19::chr20:12989873..12989887,+p4@SPTLC3
Hg19::chr20:12989895..12989914,+p5@SPTLC3
Hg19::chr20:34195420..34195438,-p1@FER1L4
Hg19::chr20:34195445..34195465,-p2@FER1L4
Hg19::chr20:34710544..34710555,+p@chr20:34710544..34710555
+
Hg19::chr20:34978362..34978366,+p@chr20:34978362..34978366
+
Hg19::chr20:39609346..39609362,+p1@uc002xjj.2
p1@uc002xjk.2
Hg19::chr20:39609364..39609377,+p3@uc002xjj.2
p3@uc002xjk.2
Hg19::chr20:39609387..39609413,+p2@uc002xjj.2
p2@uc002xjk.2
Hg19::chr21:19110984..19110994,-p@chr21:19110984..19110994
-
Hg19::chr21:30308511..30308539,-p@chr21:30308511..30308539
-
Hg19::chr21:31692404..31692419,-p1@KRTAP26-1
Hg19::chr21:31692586..31692592,-p4@KRTAP26-1
Hg19::chr21:31692602..31692613,-p3@KRTAP26-1
Hg19::chr21:31692627..31692638,-p2@KRTAP26-1
Hg19::chr21:37451680..37451687,-p9@SETD4
Hg19::chr21:40693490..40693502,-p6@BRWD1
Hg19::chr21:41122764..41122774,+p1@IGSF5
Hg19::chr21:42551385..42551388,-p@chr21:42551385..42551388
-
Hg19::chr21:42551403..42551410,-p@chr21:42551403..42551410
-
Hg19::chr21:42551445..42551453,-p@chr21:42551445..42551453
-
Hg19::chr21:42551523..42551543,-p@chr21:42551523..42551543
-
Hg19::chr21:42551544..42551551,-p@chr21:42551544..42551551
-
Hg19::chr21:42551557..42551563,-p@chr21:42551557..42551563
-
Hg19::chr21:42551579..42551580,-p@chr21:42551579..42551580
-
Hg19::chr21:42551586..42551606,-p@chr21:42551586..42551606
-
Hg19::chr21:42551621..42551633,-p@chr21:42551621..42551633
-
Hg19::chr21:42551690..42551705,-p@chr21:42551690..42551705
-
Hg19::chr21:42551715..42551726,-p@chr21:42551715..42551726
-
Hg19::chr21:42553934..42553942,-p@chr21:42553934..42553942
-
Hg19::chr21:42553949..42553963,-p@chr21:42553949..42553963
-
Hg19::chr21:42553972..42553977,-p@chr21:42553972..42553977
-
Hg19::chr21:42554031..42554038,-p@chr21:42554031..42554038
-
Hg19::chr21:42555115..42555132,-p5@PLAC4
Hg19::chr21:42556764..42556770,-p17@PLAC4
Hg19::chr21:42557218..42557229,-p1@PLAC4
Hg19::chr21:42557261..42557270,-p3@PLAC4
Hg19::chr21:42557325..42557328,-p30@PLAC4
Hg19::chr21:42557359..42557365,-p4@PLAC4
Hg19::chr21:42558034..42558041,+p@chr21:42558034..42558041
+
Hg19::chr21:42558064..42558101,-p1@ENST00000414699
Hg19::chr21:42558540..42558549,-p1@ENST00000430327
Hg19::chr21:42558703..42558723,-p1@ENST00000440221
Hg19::chr21:42558944..42558959,+p@chr21:42558944..42558959
+
Hg19::chr21:42558963..42558971,+p@chr21:42558963..42558971
+
Hg19::chr21:46964256..46964266,-p20@SLC19A1
Hg19::chr21:46964277..46964287,-p18@SLC19A1
Hg19::chr21:46964306..46964332,-p8@SLC19A1
Hg19::chr22:22036814..22036820,+p@chr22:22036814..22036820
+
Hg19::chr22:24166884..24166932,+p@chr22:24166884..24166932
+
Hg19::chr22:24199113..24199129,+p3@SLC2A11
Hg19::chr22:24199150..24199161,+p11@SLC2A11
Hg19::chr22:32925236..32925258,-p8@SYN3
Hg19::chr22:37266473..37266493,-p1@ENST00000330602
Hg19::chr22:37321976..37321992,-p@chr22:37321976..37321992
-
Hg19::chr22:37591659..37591684,-p7@C1QTNF6
Hg19::chr22:44508142..44508145,-p@chr22:44508142..44508145
-
Hg19::chr2:160567336..160567351,-p@chr2:160567336..160567351
-
Hg19::chr2:160567380..160567391,-p@chr2:160567380..160567391
-
Hg19::chr2:165698521..165698604,-p3@COBLL1
Hg19::chr2:172087794..172087808,-p16@TLK1
Hg19::chr2:172087984..172087988,-p28@TLK1
Hg19::chr2:172087996..172088005,-p25@TLK1
Hg19::chr2:172088016..172088034,-p21@TLK1
Hg19::chr2:188375830..188375837,+p@chr2:188375830..188375837
+
Hg19::chr2:188375845..188375860,+p@chr2:188375845..188375860
+
Hg19::chr2:188385338..188385354,-p@chr2:188385338..188385354
-
Hg19::chr2:189157498..189157510,+p8@GULP1
Hg19::chr2:189158840..189158863,+p17@GULP1
Hg19::chr2:233251619..233251664,-p3@ECEL1P2
Hg19::chr2:25476047..25476069,-p@chr2:25476047..25476069
-
Hg19::chr2:25704495..25704503,-p21@DTNB
Hg19::chr2:25704561..25704572,-p20@DTNB
Hg19::chr2:41267271..41267276,+p@chr2:41267271..41267276
+
Hg19::chr2:45160770..45160773,+p@chr2:45160770..45160773
+
Hg19::chr2:47043811..47043818,+p1@ENST00000409912
Hg19::chr2:47043832..47043843,+p1@ENST00000422294
Hg19::chr2:47091943..47091951,-p@chr2:47091943..47091951
-
Hg19::chr2:65275347..65275367,-p@chr2:65275347..65275367
-
Hg19::chr2:72800462..72800468,-p@chr2:72800462..72800468
-
Hg19::chr2:73056497..73056508,-p@chr2:73056497..73056508
-
Hg19::chr3:112051414..112051424,+p3@CD200
Hg19::chr3:123512689..123512717,-p36@MYLK
Hg19::chr3:128154063..128154067,+p@chr3:128154063..128154067
+
Hg19::chr3:13978766..13978775,+p6@TPRXL
Hg19::chr3:13978807..13978823,+p4@TPRXL
Hg19::chr3:13978873..13978883,+p2@TPRXL
Hg19::chr3:13978886..13978899,+p3@TPRXL
Hg19::chr3:16844143..16844150,+p16@PLCL2
Hg19::chr3:16844719..16844724,+p@chr3:16844719..16844724
+
Hg19::chr3:185017028..185017035,+p@chr3:185017028..185017035
+
Hg19::chr3:188956040..188956043,+p@chr3:188956040..188956043
+
Hg19::chr3:191994633..191994638,-p@chr3:191994633..191994638
-
Hg19::chr3:191994649..191994652,-p@chr3:191994649..191994652
-
Hg19::chr3:194860257..194860262,-p@chr3:194860257..194860262
-
Hg19::chr3:20946988..20946996,+p@chr3:20946988..20946996
+
Hg19::chr3:50306572..50306675,+p1@SEMA3B
Hg19::chr3:50510468..50510469,-p@chr3:50510468..50510469
-
Hg19::chr3:5676429..5676437,+p@chr3:5676429..5676437
+
Hg19::chr3:72101993..72102013,-p@chr3:72101993..72102013
-
Hg19::chr3:72496809..72496835,-p@chr3:72496809..72496835
-
Hg19::chr3:72507626..72507644,-p@chr3:72507626..72507644
-
Hg19::chr3:72507647..72507671,-p@chr3:72507647..72507671
-
Hg19::chr3:72507672..72507681,-p@chr3:72507672..72507681
-
Hg19::chr3:72507684..72507687,-p@chr3:72507684..72507687
-
Hg19::chr3:87045837..87045845,+p@chr3:87045837..87045845
+
Hg19::chr3:87046893..87046897,+p@chr3:87046893..87046897
+
Hg19::chr3:87437614..87437619,-p@chr3:87437614..87437619
-
Hg19::chr4:122685691..122685739,+p1@PP12613
Hg19::chr4:129245165..129245180,+p@chr4:129245165..129245180
+
Hg19::chr4:147042981..147042988,-p2@ENST00000512063
Hg19::chr4:48082160..48082170,-p6@TXK
Hg19::chr4:48082192..48082207,-p3@TXK
Hg19::chr4:57571483..57571493,-p@chr4:57571483..57571493
-
Hg19::chr4:73012228..73012234,+p5@NPFFR2
Hg19::chr4:8582208..8582224,+p5@GPR78
Hg19::chr4:8582287..8582314,+p1@GPR78
p3@CPZ
Hg19::chr4:87847552..87847559,-p@chr4:87847552..87847559
-
Hg19::chr4:89857575..89857583,-p9@FAM13A
Hg19::chr4:89857635..89857645,-p10@FAM13A
Hg19::chr5:115872128..115872139,-p10@SEMA6A
Hg19::chr5:115872159..115872172,-p9@SEMA6A
Hg19::chr5:125695805..125695848,+p10@GRAMD3
Hg19::chr5:145942779..145942799,+p1@ENST00000512730
Hg19::chr5:148442699..148442741,-p2@SH3TC2
Hg19::chr5:148463530..148463538,-p@chr5:148463530..148463538
-
Hg19::chr5:148977316..148977325,+p9@ARHGEF37
Hg19::chr5:148977331..148977341,+p11@ARHGEF37
Hg19::chr5:148977370..148977376,+p12@ARHGEF37
Hg19::chr5:148977402..148977418,+p10@ARHGEF37
Hg19::chr5:39462363..39462369,-p47@DAB2
Hg19::chr5:39462390..39462405,-p26@DAB2
Hg19::chr5:39462422..39462430,-p34@DAB2
Hg19::chr5:82969397..82969400,-p16@HAPLN1
Hg19::chr5:82969405..82969416,-p5@HAPLN1
Hg19::chr5:86448929..86448932,+p@chr5:86448929..86448932
+
Hg19::chr5:86511081..86511088,-p@chr5:86511081..86511088
-
Hg19::chr5:86518955..86518958,-p@chr5:86518955..86518958
-
Hg19::chr5:86544620..86544624,-p@chr5:86544620..86544624
-
Hg19::chr5:86547466..86547474,-p@chr5:86547466..86547474
-
Hg19::chr5:86564739..86564791,+p2@RASA1
Hg19::chr5:95053322..95053347,+p14@RHOBTB3
Hg19::chr5:95053358..95053363,+p39@RHOBTB3
Hg19::chr5:95053375..95053385,+p30@RHOBTB3
Hg19::chr5:96271141..96271152,+p17@LNPEP
Hg19::chr5:96294360..96294372,+p9@LNPEP
Hg19::chr6:10413124..10413132,-p31@TFAP2A
Hg19::chr6:106988986..106989037,+p9@AIM1
Hg19::chr6:109487024..109487039,+p@chr6:109487024..109487039
+
Hg19::chr6:116850191..116850214,+p1@FAM26D
Hg19::chr6:137494775..137494784,-p2@IL22RA2
Hg19::chr6:168447133..168447135,-p@chr6:168447133..168447135
-
Hg19::chr6:168720382..168720422,-p1@DACT2
Hg19::chr6:168720445..168720463,-p4@DACT2
Hg19::chr6:168814057..168814071,+p@chr6:168814057..168814071
+
Hg19::chr6:22303026..22303033,-p10@PRL
Hg19::chr6:22303034..22303053,-p4@PRL
Hg19::chr6:22303057..22303072,-p3@PRL
Hg19::chr6:25218719..25218771,-p6@CMAHP
Hg19::chr6:30103907..30103922,+p1@TRIM40
Hg19::chr6:41182552..41182556,-p@chr6:41182552..41182556
-
Hg19::chr6:4489012..4489056,+p@chr6:4489012..4489056
+
Hg19::chr6:4490026..4490066,+p@chr6:4490026..4490066
+
Hg19::chr6:52444110..52444117,+p1@uc003pau.1
Hg19::chr6:52774478..52774499,-p1@GSTA3
Hg19::chr6:52878820..52878846,-p@chr6:52878820..52878846
-
Hg19::chr6:53006794..53006798,-p@chr6:53006794..53006798
-
Hg19::chr6:82260991..82261019,-p@chr6:82260991..82261019
-
Hg19::chr6:82267771..82267778,+p@chr6:82267771..82267778
+
Hg19::chr6:87795313..87795321,-p@chr6:87795313..87795321
-
Hg19::chr6:87923426..87923456,+p13@ZNF292
Hg19::chr7:101848328..101848331,+p@chr7:101848328..101848331
+
Hg19::chr7:11790855..11790857,-p27@THSD7A
Hg19::chr7:11790880..11790888,-p20@THSD7A
Hg19::chr7:11790976..11791008,-p6@THSD7A
Hg19::chr7:11791023..11791032,-p19@THSD7A
Hg19::chr7:12628161..12628168,-p1@AK092521
Hg19::chr7:12628578..12628586,-p@chr7:12628578..12628586
-
Hg19::chr7:12628672..12628684,-p@chr7:12628672..12628684
-
Hg19::chr7:12630461..12630468,-p@chr7:12630461..12630468
-
Hg19::chr7:12630562..12630565,-p@chr7:12630562..12630565
-
Hg19::chr7:12631025..12631034,-p@chr7:12631025..12631034
-
Hg19::chr7:12631036..12631047,-p@chr7:12631036..12631047
-
Hg19::chr7:12631280..12631289,-p@chr7:12631280..12631289
-
Hg19::chr7:12631506..12631516,-p@chr7:12631506..12631516
-
Hg19::chr7:12632038..12632054,-p@chr7:12632038..12632054
-
Hg19::chr7:12632174..12632199,-p@chr7:12632174..12632199
-
Hg19::chr7:12632271..12632274,-p@chr7:12632271..12632274
-
Hg19::chr7:12632378..12632389,-p@chr7:12632378..12632389
-
Hg19::chr7:12632392..12632405,-p@chr7:12632392..12632405
-
Hg19::chr7:12634137..12634140,-p9@ERVFH21-1
Hg19::chr7:12634197..12634203,-p4@ERVFH21-1
Hg19::chr7:12634254..12634260,-p2@ERVFH21-1
Hg19::chr7:12634814..12634853,-p@chr7:12634814..12634853
-
Hg19::chr7:12634854..12634863,-p@chr7:12634854..12634863
-
Hg19::chr7:12635184..12635199,+p11@SCIN
Hg19::chr7:134395953..134395965,+p@chr7:134395953..134395965
+
Hg19::chr7:134395981..134395990,+p@chr7:134395981..134395990
+
Hg19::chr7:134396005..134396013,+p@chr7:134396005..134396013
+
Hg19::chr7:134551647..134551658,+p41@CALD1
Hg19::chr7:142583478..142583496,-p1@TRPV6
Hg19::chr7:142583506..142583510,-p3@TRPV6
Hg19::chr7:142583521..142583526,-p4@TRPV6
Hg19::chr7:149066896..149066899,+p@chr7:149066896..149066899
+
Hg19::chr7:150688093..150688106,+p11@NOS3
Hg19::chr7:150688140..150688162,+p7@NOS3
Hg19::chr7:150688166..150688189,+p9@NOS3
Hg19::chr7:151772116..151772127,+p9@GALNT11
Hg19::chr7:152219165..152219176,-p@chr7:152219165..152219176
-
Hg19::chr7:152219209..152219214,-p@chr7:152219209..152219214
-
Hg19::chr7:23507538..23507550,-p10@IGF2BP3
Hg19::chr7:47493279..47493290,-p36@TNS3
Hg19::chr7:47493297..47493315,-p20@TNS3
Hg19::chr7:6035241..6035258,-p@chr7:6035241..6035258
-
Hg19::chr7:6319055..6319084,-p@chr7:6319055..6319084
-
Hg19::chr7:92106780..92106814,-p@chr7:92106780..92106814
-
Hg19::chr7:93515885..93515908,-p@chr7:93515885..93515908
-
Hg19::chr7:93535817..93535822,+p2@GNGT1
Hg19::chr8:103884655..103884659,-p14@AZIN1
Hg19::chr8:103906090..103906094,-p15@AZIN1
Hg19::chr8:108790998..108791023,-p@chr8:108790998..108791023
-
Hg19::chr8:135708787..135708805,-p2@ZFAT
Hg19::chr8:19536052..19536059,+p4@ENST00000519803
Hg19::chr8:19540748..19540773,-p23@CSGALNACT1
Hg19::chr8:19615538..19615541,-p12@CSGALNACT1
Hg19::chr8:22034546..22034555,+p@chr8:22034546..22034555
+
Hg19::chr8:29452974..29452996,+p@chr8:29452974..29452996
+
Hg19::chr8:29453002..29453009,+p@chr8:29453002..29453009
+
Hg19::chr8:37456608..37456617,-p1@ENST00000522471
Hg19::chr8:39792248..39792255,+p11@IDO2
Hg19::chr8:55533828..55533872,+p10@RP1
Hg19::chr8:55533989..55534000,+p6@RP1
Hg19::chr8:61406495..61406499,+p@chr8:61406495..61406499
+
Hg19::chr8:6460106..6460111,-p@chr8:6460106..6460111
-
Hg19::chr8:67089562..67089567,-p6@CRH
Hg19::chr8:67090591..67090600,-p5@CRH
Hg19::chr8:67090603..67090613,-p4@CRH
Hg19::chr8:67090690..67090706,-p1@CRH
Hg19::chr8:67090786..67090797,-p2@CRH
Hg19::chr8:67090825..67090838,-p3@CRH
Hg19::chr8:67104323..67104334,+p1@ENST00000518412
Hg19::chr8:67104940..67104947,+p1@ENST00000517689
Hg19::chr8:67105246..67105253,+p@chr8:67105246..67105253
+
Hg19::chr8:67366097..67366114,+p2@ADHFE1
Hg19::chr8:67366122..67366143,+p4@ADHFE1
Hg19::chr8:92221719..92221734,+p2@SLC26A7
Hg19::chr9:113342305..113342325,-p9@SVEP1
Hg19::chr9:113342332..113342358,-p4@SVEP1
Hg19::chr9:118687405..118687409,-p3@LINC00474
Hg19::chr9:118687833..118687852,-p1@LINC00474
Hg19::chr9:118687860..118687875,-p2@LINC00474
Hg19::chr9:118687889..118687897,-p4@LINC00474
Hg19::chr9:118687910..118687911,-p6@LINC00474
Hg19::chr9:118687946..118687951,-p5@LINC00474
Hg19::chr9:118752198..118752206,+p@chr9:118752198..118752206
+
Hg19::chr9:118915768..118915835,+p3@PAPPA
Hg19::chr9:118915838..118915845,+p28@PAPPA
Hg19::chr9:118915956..118915981,+p8@PAPPA
Hg19::chr9:118916063..118916077,+p2@PAPPA
Hg19::chr9:118916082..118916108,+p1@PAPPA
Hg19::chr9:118922944..118922948,+p@chr9:118922944..118922948
+
Hg19::chr9:119160600..119160633,+p@chr9:119160600..119160633
+
Hg19::chr9:119160870..119160892,+p31@PAPPA
Hg19::chr9:119162208..119162219,+p48@PAPPA
Hg19::chr9:119162565..119162573,+p74@PAPPA
Hg19::chr9:119163512..119163519,+p67@PAPPA
Hg19::chr9:119163544..119163553,+p53@PAPPA
Hg19::chr9:119163586..119163595,+p60@PAPPA
Hg19::chr9:119163743..119163748,+p73@PAPPA
Hg19::chr9:119163853..119163863,+p@chr9:119163853..119163863
+
Hg19::chr9:119163919..119163928,+p@chr9:119163919..119163928
+
Hg19::chr9:119163939..119163947,+p@chr9:119163939..119163947
+
Hg19::chr9:119164000..119164021,+p@chr9:119164000..119164021
+
Hg19::chr9:119164050..119164076,+p@chr9:119164050..119164076
+
Hg19::chr9:119164532..119164543,+p@chr9:119164532..119164543
+
Hg19::chr9:135378825..135378826,-p@chr9:135378825..135378826
-
Hg19::chr9:139699211..139699222,+p@chr9:139699211..139699222
+
Hg19::chr9:17930437..17930444,+p@chr9:17930437..17930444
+
Hg19::chr9:5231413..5231425,+p1@INSL4
Hg19::chr9:90001576..90001583,-p@chr9:90001576..90001583
-
Hg19::chr9:90001590..90001601,-p@chr9:90001590..90001601
-
Hg19::chr9:90001615..90001624,-p@chr9:90001615..90001624
-
Hg19::chr9:90001639..90001706,-p@chr9:90001639..90001706
-
Hg19::chr9:90001708..90001719,-p@chr9:90001708..90001719
-
Hg19::chrX:131538374..131538385,-p@chrX:131538374..131538385
-
Hg19::chrX:131538392..131538396,-p@chrX:131538392..131538396
-
Hg19::chrX:131538435..131538444,-p@chrX:131538435..131538444
-
Hg19::chrX:133792454..133792461,-p6@PLAC1
Hg19::chrX:133792480..133792522,-p1@PLAC1
Hg19::chrX:133792540..133792551,-p4@PLAC1
Hg19::chrX:19688475..19688492,-p26@SH3KBP1
Hg19::chrX:49593888..49593929,+p1@PAGE4
Hg19::chrX:51150154..51150161,+p2@CXorf67
Hg19::chrX:7065277..7065386,+p1@STS
Hg19::chrX:7137475..7137504,+p2@STS
Hg19::chrX:7137506..7137528,+p3@STS
Hg19::chrX:7137535..7137546,+p5@STS
Hg19::chrX:7137552..7137561,+p7@STS


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.000115651661790730.0366037509567662457Steroid hormone biosynthesis (KEGG):00140
6.40868917991401e-050.03660375095676626155Myometrial Relaxation and Contraction Pathways (Wikipathways):WP289



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007565female pregnancy4.52546383755931e-20
GO:0022414reproductive process3.42221756911212e-14
GO:0051704multi-organism process1.99898290084869e-12
GO:0005615extracellular space0.000141411534361725
GO:0044421extracellular region part0.000141411534361725
GO:0048856anatomical structure development0.000382184068535946
GO:0005179hormone activity0.000626187379131387
GO:0048513organ development0.00119064252033395
GO:0032502developmental process0.00147711722873278
GO:0000267cell fraction0.00192807537599954
GO:0048731system development0.00253408582451526
GO:0007275multicellular organismal development0.00362898409182289
GO:0005509calcium ion binding0.0102040531114813
GO:0006694steroid biosynthetic process0.0102040531114813
GO:0032501multicellular organismal process0.016636182008562
GO:0042446hormone biosynthetic process0.0168072988696188
GO:0008202steroid metabolic process0.0302048214899774
GO:0017156calcium ion-dependent exocytosis0.0302048214899774
GO:0030246carbohydrate binding0.0302048214899774
GO:0005625soluble fraction0.0324457152566783
GO:0005516calmodulin binding0.037111778004254
GO:0005515protein binding0.0419747494165031
GO:0005102receptor binding0.0490815773895158



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
placenta7.35e-184
allantois7.35e-184
chorion8.16e-117


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.0388998
MA0006.12.54466e-05
MA0007.10.0223389
MA0009.10.207469
MA0014.10
MA0017.10.0977899
MA0019.10.0429676
MA0024.10.00048742
MA0025.10.235869
MA0027.10.750423
MA0028.11.84027e-08
MA0029.12.52354
MA0030.10.189928
MA0031.11.9196
MA0038.10.23797
MA0040.11.18963
MA0041.10.33298
MA0042.10.52148
MA0043.10.126167
MA0046.10.288411
MA0048.10.00443716
MA0050.10.23966
MA0051.10.222763
MA0052.10.0932932
MA0055.10.0224129
MA0056.10
MA0057.11.61945e-05
MA0058.10.0931415
MA0059.10.0171135
MA0060.11.66318e-10
MA0061.19.3226e-05
MA0063.10
MA0066.11.68187
MA0067.10.437953
MA0068.10.000793715
MA0069.10.18066
MA0070.10.682158
MA0071.11.17238
MA0072.10.495433
MA0073.15.0483e-12
MA0074.10.084036
MA0076.13.31645e-10
MA0077.10.142728
MA0078.10.0694063
MA0081.10.554578
MA0083.12.23329
MA0084.10.141152
MA0087.10.348697
MA0088.10.00206988
MA0089.10
MA0090.11.29619
MA0091.11.30232
MA0092.10.710854
MA0093.10.0367929
MA0095.10
MA0098.10
MA0100.10.00307482
MA0101.18.54139e-05
MA0103.10.71029
MA0105.11.06417e-10
MA0106.10.420177
MA0107.10.000644758
MA0108.21.39749
MA0109.10
MA0111.10.74586
MA0113.10.627981
MA0114.10.515819
MA0115.11.62057
MA0116.10.243094
MA0117.10.18025
MA0119.10.728634
MA0122.10.349115
MA0124.10.367165
MA0125.11.19634
MA0130.10
MA0131.14.10935e-05
MA0132.10
MA0133.10
MA0135.10.269884
MA0136.10.201014
MA0139.11.24014e-08
MA0140.12.95438
MA0141.12.7642
MA0142.10.0530603
MA0143.10.406708
MA0144.13.54503
MA0145.11.47934
MA0146.13.19675e-14
MA0147.14.24119e-07
MA0148.11.8198
MA0149.11.35917e-07
MA0062.23.73957e-12
MA0035.23.99991
MA0039.25.20206e-13
MA0138.20.0252022
MA0002.20.536681
MA0137.21.48146
MA0104.21.12339e-09
MA0047.21.29074
MA0112.20.72474
MA0065.20.0468961
MA0150.10.106247
MA0151.10
MA0152.10.667624
MA0153.10.0974786
MA0154.10.193951
MA0155.10.0170688
MA0156.10.000568331
MA0157.11.10351
MA0158.10
MA0159.12.31034
MA0160.11.19154
MA0161.10
MA0162.10
MA0163.12.70012e-15
MA0164.11.57733
MA0080.20.0369202
MA0018.20.138935
MA0099.20.670527
MA0079.20
MA0102.20.682227
MA0258.12.33047
MA0259.14.50032e-07
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
GATA3#2625452.303840669312542.89708442636e-071.46593314149521e-05



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C34&oldid=3067152"