FFCP PHASE1:Hg19::chr5:156693092..156693150,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:156693092..156693150,+
|short_description=p1@CYFIP2
|description=CAGE_peak_1_at_CYFIP2_5end
|association_with_transcript=0bp_to_ENST00000519002,ENST0000051...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26999 | |EntrezGene=26999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13760 | |HGNC=13760 | ||
|TSSclassifier=strong | |||
|UniProt=E5RFQ0,E7EVJ5,E7EW33,E5RKA3 | |UniProt=E5RFQ0,E7EVJ5,E7EW33,E5RKA3 | ||
|association_with_transcript=0bp_to_ENST00000519002,ENST00000519252,ENST00000521420,ENST00000522463,ENST00000522637,ENST00000523119_5end | |||
|cluster_id=chr5:156693092..156693150,+ | |||
|coexpression_cluster_id=C1402 | |||
|description=CAGE_peak_1_at_CYFIP2_5end | |||
|id=chr5:156693092..156693150,+ | |||
|ontology_enrichment_celltype=CL:0000738!9.83e-21!140;CL:0000542!1.04e-20!53;CL:0000051!1.04e-20!53;CL:0000838!2.55e-20!52;CL:0000037!1.83e-16!172;CL:0000566!1.83e-16!172;CL:0000988!3.69e-16!182;CL:0002087!2.33e-15!119;CL:0002032!4.95e-14!165;CL:0000837!4.95e-14!165;CL:0002031!9.19e-13!124;CL:0000084!1.48e-11!25;CL:0000827!1.48e-11!25;CL:0000791!6.09e-10!18;CL:0000789!6.09e-10!18;CL:0002420!6.09e-10!18;CL:0002419!6.09e-10!18;CL:0000790!6.09e-10!18;CL:0000945!1.47e-08!24;CL:0000826!1.47e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.97e-12;53!CL:0000084;1.45e-11;25!CL:0000791;5.81e-10;18!CL:0000789;5.81e-10;18!CL:0002419;5.81e-10;18!CL:0000945;1.47e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.51e-22,136;CL:0000542,9.51e-21,53;CL:0000051,9.51e-21,53;CL:0000838,2.35e-20,52;CL:0000037,6.10e-18,168;CL:0000988,1.42e-17,177;CL:0002087,5.34e-17,115;CL:0002032,2.14e-15,161;CL:0000837,2.14e-15,161;CL:0002031,3.59e-14,120;CL:0000084,1.42e-11,25;CL:0000827,1.42e-11,25;CL:0000791,5.86e-10,18;CL:0000789,5.86e-10,18;CL:0002420,5.86e-10,18;CL:0002419,5.86e-10,18;CL:0000790,5.86e-10,18;CL:0000945,1.42e-08,24;CL:0000826,1.42e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.97e-12;53!CL:0000790;5.81e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.04e-27!57;UBERON:0005068!5.04e-27!57;UBERON:0006241!5.04e-27!57;UBERON:0007135!5.04e-27!57;UBERON:0005743!9.25e-25!86;UBERON:0000073!9.97e-25!94;UBERON:0001016!9.97e-25!94;UBERON:0001017!4.86e-24!82;UBERON:0007023!7.75e-24!115;UBERON:0002780!1.47e-23!41;UBERON:0001890!1.47e-23!41;UBERON:0006240!1.47e-23!41;UBERON:0003080!1.06e-22!42;UBERON:0002346!6.50e-22!90;UBERON:0002616!7.76e-22!59;UBERON:0003075!1.41e-21!86;UBERON:0007284!1.41e-21!86;UBERON:0000955!2.82e-21!69;UBERON:0006238!2.82e-21!69;UBERON:0002020!6.33e-20!34;UBERON:0003528!6.33e-20!34;UBERON:0001893!6.90e-20!34;UBERON:0001869!1.65e-19!32;UBERON:0003056!2.30e-19!61;UBERON:0002791!2.88e-19!33;UBERON:0000956!1.60e-15!25;UBERON:0000203!1.60e-15!25;UBERON:0002619!1.97e-15!22;UBERON:0001950!4.15e-14!20;UBERON:0000153!1.70e-11!129;UBERON:0007811!1.70e-11!129;UBERON:0000033!4.36e-10!123;UBERON:0000924!6.61e-09!173;UBERON:0006601!6.61e-09!173;UBERON:0004121!1.62e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.00e-17;32!UBERON:0003528;2.45e-17;34!UBERON:0002020;2.45e-17;34!UBERON:0002791;2.64e-17;32!UBERON:0001893;2.65e-17;34!UBERON:0002780;4.10e-17;41!UBERON:0001890;4.10e-17;41!UBERON:0000956;1.42e-15;25!UBERON:0000203;1.42e-15;25!UBERON:0000073;1.63e-15;53!UBERON:0002616;1.63e-15;53!UBERON:0002619;1.80e-15;22!UBERON:0001950;3.82e-14;20!UBERON:0000955;1.97e-10;68!UBERON:0001017;4.39e-10;75!UBERON:0001016;1.96e-09;83!UBERON:0007023;3.24e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.51e-28,56;UBERON:0005068,7.51e-28,56;UBERON:0006241,7.51e-28,56;UBERON:0007135,7.51e-28,56;UBERON:0000073,7.00e-27,53;UBERON:0002616,7.00e-27,53;UBERON:0001017,1.47e-24,81;UBERON:0001016,1.85e-24,89;UBERON:0002780,1.33e-23,41;UBERON:0001890,1.33e-23,41;UBERON:0003080,1.33e-23,41;UBERON:0006240,1.33e-23,41;UBERON:0002346,2.07e-23,86;UBERON:0007023,2.62e-23,114;UBERON:0003075,4.10e-23,82;UBERON:0007284,4.10e-23,82;UBERON:0000955,8.30e-22,68;UBERON:0006238,8.30e-22,68;UBERON:0003056,2.09e-20,61;UBERON:0003528,5.83e-20,34;UBERON:0002020,5.83e-20,34;UBERON:0001893,6.35e-20,34;UBERON:0001869,1.52e-19,32;UBERON:0002791,5.26e-19,32;UBERON:0000956,1.50e-15,25;UBERON:0000203,1.50e-15,25;UBERON:0002619,1.85e-15,22;UBERON:0001950,3.93e-14,20;UBERON:0010371,6.56e-14,104;UBERON:0004121,7.43e-09,171;UBERON:0000924,7.43e-09,171;UBERON:0006601,7.43e-09,171;UBERON:0010314,1.45e-08,132 | |||
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| ||
|short_description=p1@CYFIP2 | |||
}} | }} |
Latest revision as of 13:36, 16 September 2015
Short description: | p1@CYFIP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CYFIP2_5end |
Coexpression cluster: | C1402_hippocampus_occipital_medial_pineal_temporal_parietal_amygdala |
Association with transcript: | 0bp_to_ENST00000519002, ENST00000519252, ENST00000521420, ENST00000522463, ENST00000522637, ENST00000523119_5end |
EntrezGene: | CYFIP2 |
HGNC: | 13760 |
UniProt: | E5RFQ0E7EVJ5E7EW33E5RKA3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.51e-22 | 136 |
lymphocyte | 9.51e-21 | 53 |
common lymphoid progenitor | 9.51e-21 | 53 |
lymphoid lineage restricted progenitor cell | 2.35e-20 | 52 |
hematopoietic stem cell | 6.10e-18 | 168 |
hematopoietic cell | 1.42e-17 | 177 |
nongranular leukocyte | 5.34e-17 | 115 |
hematopoietic oligopotent progenitor cell | 2.14e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.14e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 3.59e-14 | 120 |
T cell | 1.42e-11 | 25 |
pro-T cell | 1.42e-11 | 25 |
mature alpha-beta T cell | 5.86e-10 | 18 |
alpha-beta T cell | 5.86e-10 | 18 |
immature T cell | 5.86e-10 | 18 |
mature T cell | 5.86e-10 | 18 |
immature alpha-beta T cell | 5.86e-10 | 18 |
lymphocyte of B lineage | 1.42e-08 | 24 |
pro-B cell | 1.42e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
neural tube | 7.51e-28 | 56 |
neural rod | 7.51e-28 | 56 |
future spinal cord | 7.51e-28 | 56 |
neural keel | 7.51e-28 | 56 |
regional part of nervous system | 7.00e-27 | 53 |
regional part of brain | 7.00e-27 | 53 |
central nervous system | 1.47e-24 | 81 |
nervous system | 1.85e-24 | 89 |
regional part of forebrain | 1.33e-23 | 41 |
forebrain | 1.33e-23 | 41 |
anterior neural tube | 1.33e-23 | 41 |
future forebrain | 1.33e-23 | 41 |
neurectoderm | 2.07e-23 | 86 |
adult organism | 2.62e-23 | 114 |
neural plate | 4.10e-23 | 82 |
presumptive neural plate | 4.10e-23 | 82 |
brain | 8.30e-22 | 68 |
future brain | 8.30e-22 | 68 |
pre-chordal neural plate | 2.09e-20 | 61 |
brain grey matter | 5.83e-20 | 34 |
gray matter | 5.83e-20 | 34 |
telencephalon | 6.35e-20 | 34 |
cerebral hemisphere | 1.52e-19 | 32 |
regional part of telencephalon | 5.26e-19 | 32 |
cerebral cortex | 1.50e-15 | 25 |
pallium | 1.50e-15 | 25 |
regional part of cerebral cortex | 1.85e-15 | 22 |
neocortex | 3.93e-14 | 20 |
ecto-epithelium | 6.56e-14 | 104 |
ectoderm-derived structure | 7.43e-09 | 171 |
ectoderm | 7.43e-09 | 171 |
presumptive ectoderm | 7.43e-09 | 171 |
structure with developmental contribution from neural crest | 1.45e-08 | 132 |