FFCP PHASE1:Hg19::chr5:139943886..139943967,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:139943886..139943967,-
|short_description=p1@APBB3
|description=CAGE_peak_1_at_APBB3_5end
|association_with_transcript=0bp_to_ENST00000358580,ENST000005061...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10307 | |EntrezGene=10307 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20708 | |HGNC=20708 | ||
|TSSclassifier=strong | |||
|UniProt=E7EX91,F5H1N5,Q9BYD4,D6RJB2 | |UniProt=E7EX91,F5H1N5,Q9BYD4,D6RJB2 | ||
|association_with_transcript=0bp_to_ENST00000358580,ENST00000506165,ENST00000508496,ENST00000509914,ENST00000511896,uc003lgc.1_5end | |||
|cluster_id=chr5:139943886..139943967,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_APBB3_5end | |||
|id=chr5:139943886..139943967,- | |||
|ontology_enrichment_celltype=CL:0002057!7.51e-22!42;CL:0000860!1.24e-18!45;CL:0000766!2.85e-15!76;CL:0000557!4.60e-13!71;CL:0002009!5.12e-13!65;CL:0002194!1.02e-12!63;CL:0000576!1.02e-12!63;CL:0000040!1.02e-12!63;CL:0000559!1.02e-12!63;CL:0000839!2.47e-11!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.32e-20;33!CL:0002057;5.32e-20;33!CL:0000473;1.90e-15;39!CL:0000234;1.90e-15;39!CL:0000576;3.81e-12;48!CL:0000766;3.49e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.76e-22,42;CL:0002057,6.76e-22,42;CL:0000473,6.80e-21,48;CL:0000234,6.80e-21,48;CL:0000766,9.75e-17,72;CL:0002009,1.46e-14,61;CL:0000557,2.00e-14,67;CL:0002194,2.85e-14,59;CL:0000576,2.85e-14,59;CL:0000040,2.85e-14,59;CL:0000559,2.85e-14,59;CL:0000839,1.47e-12,66 | |||
|ontology_enrichment_development_v019=CL:0002057;3.36e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.39e-26!115;UBERON:0001049!5.56e-16!57;UBERON:0005068!5.56e-16!57;UBERON:0006241!5.56e-16!57;UBERON:0007135!5.56e-16!57;UBERON:0002616!5.08e-14!59;UBERON:0003080!9.09e-13!42;UBERON:0002780!1.36e-12!41;UBERON:0001890!1.36e-12!41;UBERON:0006240!1.36e-12!41;UBERON:0002390!1.56e-12!102;UBERON:0003061!1.56e-12!102;UBERON:0000955!2.34e-12!69;UBERON:0006238!2.34e-12!69;UBERON:0002371!1.08e-11!80;UBERON:0001017!1.88e-11!82;UBERON:0001474!3.78e-11!86;UBERON:0005743!5.53e-11!86;UBERON:0003075!9.81e-11!86;UBERON:0007284!9.81e-11!86;UBERON:0001893!2.59e-10!34;UBERON:0002346!2.74e-10!90;UBERON:0000073!3.56e-10!94;UBERON:0001016!3.56e-10!94;UBERON:0002020!4.59e-10!34;UBERON:0003528!4.59e-10!34;UBERON:0002791!8.05e-10!33;UBERON:0001869!1.24e-09!32;UBERON:0002193!1.87e-09!112;UBERON:0004765!2.44e-09!101;UBERON:0001434!2.44e-09!101;UBERON:0002619!3.02e-09!22;UBERON:0000062!7.58e-09!511;UBERON:0001950!2.37e-08!20;UBERON:0000956!2.19e-07!25;UBERON:0000203!2.19e-07!25;UBERON:0002405!3.45e-07!115;UBERON:0003056!4.29e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.75e-09;41!UBERON:0001890;2.75e-09;41!UBERON:0002619;3.62e-09;22!UBERON:0000073;3.66e-09;53!UBERON:0002616;3.66e-09;53!UBERON:0001893;6.54e-09;34!UBERON:0003528;1.50e-08;34!UBERON:0002020;1.50e-08;34!UBERON:0001869;1.66e-08;32!UBERON:0002791;2.73e-08;32!UBERON:0001950;2.87e-08;20!UBERON:0007023;2.09e-07;114!UBERON:0000956;3.20e-07;25!UBERON:0000203;3.20e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.17e-25,114;UBERON:0001049,9.66e-16,56;UBERON:0005068,9.66e-16,56;UBERON:0006241,9.66e-16,56;UBERON:0007135,9.66e-16,56;UBERON:0000073,6.39e-15,53;UBERON:0002616,6.39e-15,53;UBERON:0002390,1.55e-13,98;UBERON:0003061,1.55e-13,98;UBERON:0002371,7.98e-13,76;UBERON:0002780,1.58e-12,41;UBERON:0001890,1.58e-12,41;UBERON:0003080,1.58e-12,41;UBERON:0006240,1.58e-12,41;UBERON:0001474,3.64e-12,82;UBERON:0000955,4.78e-12,68;UBERON:0006238,4.78e-12,68;UBERON:0003075,3.86e-11,82;UBERON:0007284,3.86e-11,82;UBERON:0001017,4.01e-11,81;UBERON:0002346,1.18e-10,86;UBERON:0001016,2.98e-10,89;UBERON:0001893,3.03e-10,34;UBERON:0002193,3.80e-10,108;UBERON:0004765,4.10e-10,90;UBERON:0003528,5.36e-10,34;UBERON:0002020,5.36e-10,34;UBERON:0001869,1.45e-09,32;UBERON:0001434,1.96e-09,100;UBERON:0002791,2.61e-09,32;UBERON:0002619,2.90e-09,22;UBERON:0001950,2.29e-08,20;UBERON:0002405,4.26e-08,93;UBERON:0010314,1.10e-07,132;UBERON:0000956,2.57e-07,25;UBERON:0000203,2.57e-07,25;UBERON:0003081,3.53e-07,203;UBERON:0003056,4.67e-07,61;UBERON:0010371,8.17e-07,104;UBERON:0000923,8.76e-07,560;UBERON:0010316,8.76e-07,560;UBERON:0005291,8.76e-07,560;UBERON:0006598,8.76e-07,560;UBERON:0010317,8.76e-07,560;UBERON:0002532,8.76e-07,560 | |||
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| ||
|short_description=p1@APBB3 | |||
}} | }} |
Latest revision as of 02:03, 25 September 2015
Short description: | p1@APBB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_APBB3_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000358580, ENST00000506165, ENST00000508496, ENST00000509914, ENST00000511896, uc003lgc.1_5end |
EntrezGene: | APBB3 |
HGNC: | 20708 |
UniProt: | E7EX91F5H1N5Q9BYD4D6RJB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.76e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.76e-22 | 42 |
defensive cell | 6.80e-21 | 48 |
phagocyte | 6.80e-21 | 48 |
myeloid leukocyte | 9.75e-17 | 72 |
macrophage dendritic cell progenitor | 1.46e-14 | 61 |
granulocyte monocyte progenitor cell | 2.00e-14 | 67 |
monopoietic cell | 2.85e-14 | 59 |
monocyte | 2.85e-14 | 59 |
monoblast | 2.85e-14 | 59 |
promonocyte | 2.85e-14 | 59 |
myeloid lineage restricted progenitor cell | 1.47e-12 | 66 |