FFCP PHASE1:Hg19::chr5:138629389..138629416,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:138629389..138629416,+
|short_description=p4@MATR3
|description=CAGE_peak_4_at_MATR3_5end
|association_with_transcript=0bp_to_ENST00000502499,ENST000005040...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9782 | |EntrezGene=9782 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6912 | |HGNC=6912 | ||
|TSSclassifier=strong | |||
|UniProt=B3KM87,D6R991,D6RBI2 | |UniProt=B3KM87,D6R991,D6RBI2 | ||
|association_with_transcript=0bp_to_ENST00000502499,ENST00000504045,ENST00000504311,ENST00000513121_5end | |||
|cluster_id=chr5:138629389..138629416,+ | |||
|coexpression_cluster_id=C2804 | |||
|description=CAGE_peak_4_at_MATR3_5end | |||
|id=chr5:138629389..138629416,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.59e-13!140;CL:0002031!3.25e-10!124;CL:0002087!6.70e-10!119;CL:0000542!6.71e-10!53;CL:0000051!6.71e-10!53;CL:0000037!9.66e-10!172;CL:0000566!9.66e-10!172;CL:0000838!1.74e-09!52;CL:0002032!3.85e-08!165;CL:0000837!3.85e-08!165;CL:0000988!1.07e-07!182 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.08e-12,136;CL:0000542,6.71e-10,53;CL:0000051,6.71e-10,53;CL:0002031,1.22e-09,120;CL:0000838,1.74e-09,52;CL:0002087,2.50e-09,115;CL:0000037,3.37e-09,168;CL:0002032,1.23e-07,161;CL:0000837,1.23e-07,161;CL:0000988,1.57e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.76e-18!82;UBERON:0005743!1.26e-16!86;UBERON:0000073!1.46e-15!94;UBERON:0001016!1.46e-15!94;UBERON:0001049!3.45e-15!57;UBERON:0005068!3.45e-15!57;UBERON:0006241!3.45e-15!57;UBERON:0007135!3.45e-15!57;UBERON:0003080!7.78e-15!42;UBERON:0002780!2.24e-14!41;UBERON:0001890!2.24e-14!41;UBERON:0006240!2.24e-14!41;UBERON:0000955!3.88e-13!69;UBERON:0006238!3.88e-13!69;UBERON:0002616!4.53e-13!59;UBERON:0002020!1.96e-12!34;UBERON:0003528!1.96e-12!34;UBERON:0001893!3.23e-12!34;UBERON:0002791!5.11e-12!33;UBERON:0001869!8.93e-12!32;UBERON:0000956!1.02e-09!25;UBERON:0000203!1.02e-09!25;UBERON:0002346!2.45e-09!90;UBERON:0002619!3.97e-09!22;UBERON:0003056!8.26e-09!61;UBERON:0003075!9.71e-09!86;UBERON:0007284!9.71e-09!86;UBERON:0001950!1.84e-08!20;UBERON:0007023!8.99e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;3.32e-11;32!UBERON:0001869;5.67e-11;32!UBERON:0003528;6.53e-11;34!UBERON:0002020;6.53e-11;34!UBERON:0001893;9.51e-11;34!UBERON:0002780;1.58e-10;41!UBERON:0001890;1.58e-10;41!UBERON:0000956;8.68e-10;25!UBERON:0000203;8.68e-10;25!UBERON:0002619;4.02e-09;22!UBERON:0000073;1.73e-08;53!UBERON:0002616;1.73e-08;53!UBERON:0001950;1.93e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.32e-17,81;UBERON:0001016,2.17e-16,89;UBERON:0001049,9.67e-15,56;UBERON:0005068,9.67e-15,56;UBERON:0006241,9.67e-15,56;UBERON:0007135,9.67e-15,56;UBERON:0002780,2.24e-14,41;UBERON:0001890,2.24e-14,41;UBERON:0003080,2.24e-14,41;UBERON:0006240,2.24e-14,41;UBERON:0000073,7.39e-14,53;UBERON:0002616,7.39e-14,53;UBERON:0000955,9.96e-13,68;UBERON:0006238,9.96e-13,68;UBERON:0003528,1.96e-12,34;UBERON:0002020,1.96e-12,34;UBERON:0001893,3.23e-12,34;UBERON:0002791,5.33e-12,32;UBERON:0001869,8.93e-12,32;UBERON:0000956,1.02e-09,25;UBERON:0000203,1.02e-09,25;UBERON:0002619,3.97e-09,22;UBERON:0002346,7.99e-09,86;UBERON:0001950,1.84e-08,20;UBERON:0003056,2.54e-08,61;UBERON:0003075,3.12e-08,82;UBERON:0007284,3.12e-08,82 | |||
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| ||
|short_description=p4@MATR3 | |||
}} | }} |
Latest revision as of 23:53, 24 September 2015
Short description: | p4@MATR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MATR3_5end |
Coexpression cluster: | C2804_parietal_Mast_Neurons_occipital_Neural_Fibroblast_pineal |
Association with transcript: | 0bp_to_ENST00000502499, ENST00000504045, ENST00000504311, ENST00000513121_5end |
EntrezGene: | MATR3 |
HGNC: | 6912 |
UniProt: | B3KM87D6R991D6RBI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.08e-12 | 136 |
lymphocyte | 6.71e-10 | 53 |
common lymphoid progenitor | 6.71e-10 | 53 |
hematopoietic lineage restricted progenitor cell | 1.22e-09 | 120 |
lymphoid lineage restricted progenitor cell | 1.74e-09 | 52 |
nongranular leukocyte | 2.50e-09 | 115 |
hematopoietic stem cell | 3.37e-09 | 168 |
hematopoietic oligopotent progenitor cell | 1.23e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.23e-07 | 161 |
hematopoietic cell | 1.57e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.32e-17 | 81 |
nervous system | 2.17e-16 | 89 |
neural tube | 9.67e-15 | 56 |
neural rod | 9.67e-15 | 56 |
future spinal cord | 9.67e-15 | 56 |
neural keel | 9.67e-15 | 56 |
regional part of forebrain | 2.24e-14 | 41 |
forebrain | 2.24e-14 | 41 |
anterior neural tube | 2.24e-14 | 41 |
future forebrain | 2.24e-14 | 41 |
regional part of nervous system | 7.39e-14 | 53 |
regional part of brain | 7.39e-14 | 53 |
brain | 9.96e-13 | 68 |
future brain | 9.96e-13 | 68 |
brain grey matter | 1.96e-12 | 34 |
gray matter | 1.96e-12 | 34 |
telencephalon | 3.23e-12 | 34 |
regional part of telencephalon | 5.33e-12 | 32 |
cerebral hemisphere | 8.93e-12 | 32 |
cerebral cortex | 1.02e-09 | 25 |
pallium | 1.02e-09 | 25 |
regional part of cerebral cortex | 3.97e-09 | 22 |
neurectoderm | 7.99e-09 | 86 |
neocortex | 1.84e-08 | 20 |
pre-chordal neural plate | 2.54e-08 | 61 |
neural plate | 3.12e-08 | 82 |
presumptive neural plate | 3.12e-08 | 82 |