FFCP PHASE1:Hg19::chr5:133561752..133561791,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:133561752..133561791,-
|short_description=p1@PPP2CA,p2@SKP1
|description=CAGE_peak_1_at_PPP2CA_5end,CAGE_peak_2_at_SKP1_5end
|association_with_transcript=0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5515,6500 | |EntrezGene=5515,6500 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9299,10899 | |HGNC=9299,10899 | ||
|TSSclassifier=strong | |||
|UniProt=E5RI56 | |UniProt=E5RI56 | ||
|association_with_transcript=0bp_to_ENST00000231504,ENST00000519718_5end | |||
|cluster_id=chr5:133561752..133561791,- | |||
|coexpression_cluster_id=C1210 | |||
|description=CAGE_peak_1_at_PPP2CA_5end,CAGE_peak_2_at_SKP1_5end | |||
|id=chr5:133561752..133561791,- | |||
|ontology_enrichment_celltype=CL:0000738!7.17e-38!140;CL:0000037!1.88e-32!172;CL:0000566!1.88e-32!172;CL:0002031!2.52e-30!124;CL:0002032!5.68e-30!165;CL:0000837!5.68e-30!165;CL:0000988!1.48e-29!182;CL:0002087!2.30e-28!119;CL:0000766!1.18e-25!76;CL:0002057!3.88e-25!42;CL:0000860!7.74e-25!45;CL:0000557!1.70e-22!71;CL:0000839!1.77e-21!70;CL:0000763!3.35e-21!112;CL:0000049!3.35e-21!112;CL:0002009!6.24e-21!65;CL:0002194!5.11e-20!63;CL:0000576!5.11e-20!63;CL:0000040!5.11e-20!63;CL:0000559!5.11e-20!63;CL:0000838!1.38e-08!52;CL:0000542!2.90e-08!53;CL:0000051!2.90e-08!53;CL:0000134!8.21e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.31e-19;33!CL:0002057;2.31e-19;33!CL:0000576;2.69e-15;48!CL:0000473;1.10e-12;39!CL:0000234;1.10e-12;39!CL:0000766;2.38e-12;69!CL:0002087;2.11e-09;104!CL:0000738;4.54e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.53e-38,136;CL:0000037,7.55e-33,168;CL:0002031,6.10e-31,120;CL:0000988,1.24e-30,177;CL:0002032,2.34e-30,161;CL:0000837,2.34e-30,161;CL:0002087,5.74e-29,115;CL:0000766,1.23e-26,72;CL:0000860,3.88e-25,42;CL:0002057,3.88e-25,42;CL:0000557,2.07e-23,67;CL:0000839,2.32e-22,66;CL:0002009,7.15e-22,61;CL:0000763,1.16e-21,108;CL:0000049,1.16e-21,108;CL:0002194,6.03e-21,59;CL:0000576,6.03e-21,59;CL:0000040,6.03e-21,59;CL:0000559,6.03e-21,59;CL:0000473,2.08e-20,48;CL:0000234,2.08e-20,48;CL:0000838,1.38e-08,52;CL:0000542,2.90e-08,53;CL:0000051,2.90e-08,53;CL:0000134,8.38e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;2.43e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.17e-19!102;UBERON:0003061!7.17e-19!102;UBERON:0002371!7.84e-18!80;UBERON:0001474!3.72e-16!86;UBERON:0002193!1.33e-14!112;UBERON:0004765!3.53e-14!101;UBERON:0001434!3.53e-14!101;UBERON:0002405!1.36e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.52e-19,98;UBERON:0003061,2.52e-19,98;UBERON:0002371,2.01e-18,76;UBERON:0004765,1.11e-16,90;UBERON:0001474,1.25e-16,82;UBERON:0002193,6.93e-15,108;UBERON:0001434,4.06e-14,100;UBERON:0002405,1.08e-13,93 | |||
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| ||
|short_description=p1@PPP2CA,p2@SKP1 | |||
}} | }} |
Latest revision as of 08:46, 20 September 2015
Short description: | p1@PPP2CA, p2@SKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPP2CA_5end, CAGE_peak_2_at_SKP1_5end |
Coexpression cluster: | C1210_CD14_Mast_immature_Eosinophils_Basophils_Neutrophils_CD34 |
Association with transcript: | 0bp_to_ENST00000231504, ENST00000519718_5end |
EntrezGene: | 5515,6500 |
HGNC: | 10899&submit=Submit 9299, 10899 |
UniProt: | E5RI56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.53e-38 | 136 |
hematopoietic stem cell | 7.55e-33 | 168 |
hematopoietic lineage restricted progenitor cell | 6.10e-31 | 120 |
hematopoietic cell | 1.24e-30 | 177 |
hematopoietic oligopotent progenitor cell | 2.34e-30 | 161 |
hematopoietic multipotent progenitor cell | 2.34e-30 | 161 |
nongranular leukocyte | 5.74e-29 | 115 |
myeloid leukocyte | 1.23e-26 | 72 |
classical monocyte | 3.88e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.88e-25 | 42 |
granulocyte monocyte progenitor cell | 2.07e-23 | 67 |
myeloid lineage restricted progenitor cell | 2.32e-22 | 66 |
macrophage dendritic cell progenitor | 7.15e-22 | 61 |
myeloid cell | 1.16e-21 | 108 |
common myeloid progenitor | 1.16e-21 | 108 |
monopoietic cell | 6.03e-21 | 59 |
monocyte | 6.03e-21 | 59 |
monoblast | 6.03e-21 | 59 |
promonocyte | 6.03e-21 | 59 |
defensive cell | 2.08e-20 | 48 |
phagocyte | 2.08e-20 | 48 |
lymphoid lineage restricted progenitor cell | 1.38e-08 | 52 |
lymphocyte | 2.90e-08 | 53 |
common lymphoid progenitor | 2.90e-08 | 53 |
mesenchymal cell | 8.38e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.52e-19 | 98 |
blood island | 2.52e-19 | 98 |
bone marrow | 2.01e-18 | 76 |
skeletal element | 1.11e-16 | 90 |
bone element | 1.25e-16 | 82 |
hemolymphoid system | 6.93e-15 | 108 |
skeletal system | 4.06e-14 | 100 |
immune system | 1.08e-13 | 93 |