FFCP PHASE1:Hg19::chr4:108745881..108745897,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:108745881..108745897,+
|short_description=p4@SGMS2
|description=CAGE_peak_4_at_SGMS2_5end
|association_with_transcript=-140bp_to_ENST00000515332_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=166929 | |EntrezGene=166929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |HGNC=28395 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-140bp_to_ENST00000515332_5end | |||
|cluster_id=chr4:108745881..108745897,+ | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_4_at_SGMS2_5end | |||
|id=chr4:108745881..108745897,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.26e-10!45;CL:0002057!1.74e-10!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.08e-12;33!CL:0002057;2.08e-12;33!CL:0000473;1.14e-07;39!CL:0000234;1.14e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.25e-11,42;CL:0002057,1.25e-11,42;CL:0000473,1.09e-08,48;CL:0000234,1.09e-08,48 | |||
|ontology_enrichment_development_v019=CL:0002057;4.36e-09;42!UBERON:0006595;7.08e-07;86!UBERON:0005795;7.82e-07;10 | |||
|ontology_enrichment_disease=DOID:305!1.88e-11!106;DOID:1749!6.14e-08!14;DOID:299!7.28e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.78e-10;14!DOID:299;1.51e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.72e-13,106;DOID:1749,1.23e-09,14;DOID:299,1.37e-07,25;DOID:0050687,6.34e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000062!4.04e-20!511;UBERON:0000480!8.17e-15!626;UBERON:0000467!1.39e-14!625;UBERON:0000922!5.52e-14!612;UBERON:0002050!1.11e-13!605;UBERON:0005423!1.11e-13!605;UBERON:0000468!1.56e-13!659;UBERON:0000923!2.57e-13!604;UBERON:0005291!2.57e-13!604;UBERON:0006598!2.57e-13!604;UBERON:0002532!2.57e-13!604;UBERON:0000926!2.23e-12!448;UBERON:0004120!2.23e-12!448;UBERON:0006603!2.23e-12!448;UBERON:0004119!4.29e-11!169;UBERON:0000925!4.29e-11!169;UBERON:0006595!4.29e-11!169;UBERON:0001007!3.79e-10!155;UBERON:0001555!3.79e-10!155;UBERON:0007026!3.79e-10!155;UBERON:0004175!1.66e-08!25;UBERON:0004921!2.31e-08!129;UBERON:0004185!2.31e-08!129;UBERON:0003100!4.75e-08!41;UBERON:0005156!5.27e-08!59;UBERON:0000990!5.27e-08!59;UBERON:0005631!1.02e-07!14;UBERON:0000158!1.02e-07!14;UBERON:0003134!1.64e-07!37;UBERON:0000474!1.64e-07!37;UBERON:0000077!1.66e-07!130;UBERON:0005795!2.10e-07!22;UBERON:0003975!2.37e-07!22;UBERON:0004923!3.53e-07!57;UBERON:0000995!6.19e-07!21;UBERON:0003133!8.45e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004175;9.49e-08;21!UBERON:0005631;2.95e-07;10!UBERON:0000158;2.95e-07;10!UBERON:0000474;3.15e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.97e-10,160;UBERON:0000925,1.97e-10,160;UBERON:0006595,1.97e-10,160;UBERON:0004175,1.17e-09,25;UBERON:0005631,2.34e-09,14;UBERON:0000158,2.34e-09,14;UBERON:0001007,3.46e-09,145;UBERON:0001555,3.46e-09,145;UBERON:0007026,3.46e-09,145;UBERON:0005795,2.76e-08,22;UBERON:0003975,3.20e-08,22;UBERON:0003100,4.75e-08,41;UBERON:0004921,1.03e-07,118;UBERON:0000995,1.05e-07,21;UBERON:0003134,1.36e-07,37;UBERON:0000474,1.36e-07,37;UBERON:0003133,2.72e-07,48;UBERON:0005156,4.66e-07,59;UBERON:0000990,4.66e-07,59 | |||
|phase1_expression=1.2717486548939,0,1.83240725324762,2.00146596706261,0.893922188854576,3.48935409640147,0,0.631719873426831,0,0.737201809504527,0.697801167972428,2.83973783769224,1.05506791291381,0.37129905888014,0.662794751455832,0.672325146451775,0,0.730310090387373,0,0.123121058076788,0,0,1.14494394852423,0.410623275218653,0.125542639594803,0,0,0,0.393364276848904,1.53531759238885,1.23852898652861,0,0.30120591877825,1.10926203050036,0,0,1.46800219667424,3.32397245119126,2.4065333696417,3.47217393145363,0.223915474239924,0,0,0.726991193897824,3.77875943688809,2.18325655069035,1.16214518452842,1.23350366406548,4.64559556342655,1.7261543539329,4.61089271752381,6.14853797710322,10.6871161028352,12.9096936716765,8.12558919566051,2.63539275359647,2.18324920046277,1.57306439111559,6.73384563215986,9.30694178520671,10.2293940127847,1.64925650093358,2.39356389145958,1.27867425159808,5.80418477257168,6.80862269629368,11.2108004819203,2.51248665256743,3.65038042894141,6.73285418585862,4.84319602106695,16.5724936194404,14.2408074348398,0.211255286311942,0.425208599930087,1.04829322754188,0.336985893439485,0.750884464207532,1.6072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36305137788922,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,1.91793842765295,0,0.50133791063589,0.869079113764942,0,0.973269740605272,0.945348171640679,0.221729397462564,1.05401742831751,3.27447688744282,0,0.370784442784429,0,0,0,0,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0,0.825354125820202,0.208994966536811,0.775250277507987,1.06729878806013,0.66944122552934,0.402829317109147,0,0.24406205754817,0,0.81014194788176,1.69669483739752,0.898117490504679,1.12611480483322,1.53316637465883,0,0.366403487860815,0,0,0,0.993943903390637,1.13967460498122,1.32409180813219,5.16305917347865,1.41867352879343,0,0,0.24666754841716,1.24484414159907,0.67355336034844,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0.149448680551801,0,0,0.140450806702248,0.204154171254893,0.245668634623536,0.723280468230358,0,0.741800787835671,0,0,0.168336113954066,0,0.554128230968366,0,0.30648779579902,0,1.47461838108027,0.358779271377724,0,0,0.600182192168805,0,0.257640540045629,0.37223371266318,0,0,0,0.0920498986422993,0.969876340912871,0.710019185033229,0,0.169560592310488,1.54608682530637,1.09098448236334,1.43402297694502,0.121973706129595,0.397589304964456,0.232387885739037,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,2.01121560067735,0.674338760312407,1.20505514941741,1.21323370005633,0.653638332277218,1.42362371466658,1.61797569792197,1.17732879075208,1.15424147083917,0,0,0.8231480226628,0,1.26755034821831,1.96565443335525,1.77236972004421,0,0.491953754172454,0.514703430895577,1.20725313949488,0,0.804231779293047,2.12953423864618,0,0,1.44331342025273,0.463721619900307,3.17003474436719,0.144366447761074,0,0.190254152234598,2.37061319387782,0,0,0,0,1.87467667973554,1.84780341018745,0.850650583454319,2.05984602216551,1.74380363108377,0.383382679165211,5.41929561685538,0.088048434013226,1.86595303986695,1.00883967391873,2.14612136824846,0,0,0,0,0,0,0,0,0,0.07333828582095,2.58543431515556,0,0,1.86156681609409,4.16029747645464,0.257207374262142,0,0,1.57275793023962,0,0,0.65147236858747,0.355391948742546,0,2.41151501647669,3.48613383440118,2.59929777073348,0,0.502257091432126,0,0.958499421966331,0,1.42636905040718,1.88215698667853,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,1.49801404789436,0,0,0.613457458595699,0,0,1.03985430765404,1.24900292158013,0.473107245101804,1.05427273493442,1.50473049863859,0,0,0,0.553107505625109,0.434418072340414,0,0,0.620304078368662,1.07857100409308,0.213455115606889,6.06255142892519,1.66435439510497,2.72151263996712,1.24053903909388,1.68808170616869,0.561320188866147,2.43464383585832,2.55853624533352,2.41280881715411,0,0.616838775210622,0,0.164254312027618,0.519254429183621,0.232420756919918,1.20859449591622,0.601519410909855,2.20994373446151,1.37777337797528,0.910455840033585,0.917870904715969,0.451199612907412,0.231046011313244,0,0,1.05551628892876,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0.447749509444357,0,0,4.10320200186223,0.656029291399411,7.80908147194327,11.2314702696017,3.93748698718877,4.20798449594999,0,0,0,0.096670718292122,0.616194468458578,0,0.275673144969061,0.644521469209642,0.435050081742686,0.255679882248303,0.801288320820636,3.14041339185858,2.30628080838127,8.0396008871588,2.2254711788221,0,0.62962469366128,0.6970372701606,0,0.532306030317022,0.869932992075073,0.18532421910392,1.14499909393593,0.744316738719335,0.316379424718726,2.47819252100972,0,0.42793898803392,0.636406495851874,0,0.539617372749944,1.09814811894422,0.235624804691373,0,0,0.421258456238981,1.95053495635836,0.243713489631284,1.05650146756755,0.9554993798559,0.848432591722276,0,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0.811641507850816,0,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| ||
|short_description=p4@SGMS2 | |||
}} | }} |
Latest revision as of 07:39, 20 September 2015
Short description: | p4@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SGMS2_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | -140bp_to_ENST00000515332_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.25e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.25e-11 | 42 |
defensive cell | 1.09e-08 | 48 |
phagocyte | 1.09e-08 | 48 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.97e-10 | 160 |
endoderm | 1.97e-10 | 160 |
presumptive endoderm | 1.97e-10 | 160 |
internal genitalia | 1.17e-09 | 25 |
extraembryonic membrane | 2.34e-09 | 14 |
membranous layer | 2.34e-09 | 14 |
digestive system | 3.46e-09 | 145 |
digestive tract | 3.46e-09 | 145 |
primitive gut | 3.46e-09 | 145 |
embryonic uterus | 2.76e-08 | 22 |
internal female genitalia | 3.20e-08 | 22 |
female organism | 4.75e-08 | 41 |
subdivision of digestive tract | 1.03e-07 | 118 |
uterus | 1.05e-07 | 21 |
female reproductive organ | 1.36e-07 | 37 |
female reproductive system | 1.36e-07 | 37 |
reproductive organ | 2.72e-07 | 48 |
reproductive structure | 4.66e-07 | 59 |
reproductive system | 4.66e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.72e-13 | 106 |
squamous cell carcinoma | 1.23e-09 | 14 |
adenocarcinoma | 1.37e-07 | 25 |
cell type cancer | 6.34e-07 | 143 |