FFCP PHASE1:Hg19::chr4:106156933..106156947,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:106156933..106156947,+
|short_description=p3@TET2
|description=CAGE_peak_3_at_TET2_5end
|association_with_transcript=20bp_to_AK027819_5end
|EntrezGene=547...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54790 | |EntrezGene=54790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=25941 | |HGNC=25941 | ||
|TSSclassifier=strong | |||
|UniProt=Q6N021 | |UniProt=Q6N021 | ||
|association_with_transcript=20bp_to_AK027819_5end | |||
|cluster_id=chr4:106156933..106156947,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_3_at_TET2_5end | |||
|id=chr4:106156933..106156947,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.96e-25!42;CL:0000860!1.04e-23!45;CL:0000766!2.49e-23!76;CL:0000557!1.37e-21!71;CL:0002009!1.95e-21!65;CL:0000763!2.44e-21!112;CL:0000049!2.44e-21!112;CL:0002194!1.04e-20!63;CL:0000576!1.04e-20!63;CL:0000040!1.04e-20!63;CL:0000559!1.04e-20!63;CL:0000839!1.78e-20!70;CL:0000738!2.10e-17!140;CL:0000037!2.91e-17!172;CL:0000566!2.91e-17!172;CL:0002032!4.19e-17!165;CL:0000837!4.19e-17!165;CL:0002087!5.69e-15!119;CL:0002031!1.35e-14!124;CL:0000988!3.63e-14!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.84e-36;33!CL:0002057;1.84e-36;33!CL:0000473;2.14e-29;39!CL:0000234;2.14e-29;39!CL:0000576;3.12e-23;48!CL:0000766;6.33e-19;69!CL:0000763;3.60e-10;100!CL:0002087;5.78e-10;104!CL:0000738;4.56e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.55e-42,42;CL:0002057,2.55e-42,42;CL:0000473,2.25e-41,48;CL:0000234,2.25e-41,48;CL:0000766,3.36e-37,72;CL:0002009,2.18e-33,61;CL:0000557,3.43e-33,67;CL:0002194,3.77e-33,59;CL:0000576,3.77e-33,59;CL:0000040,3.77e-33,59;CL:0000559,3.77e-33,59;CL:0000839,3.72e-32,66;CL:0000738,8.54e-29,136;CL:0000763,3.34e-28,108;CL:0000049,3.34e-28,108;CL:0002087,2.68e-26,115;CL:0000037,1.22e-25,168;CL:0002032,5.80e-25,161;CL:0000837,5.80e-25,161;CL:0002031,2.21e-24,120;CL:0000988,4.58e-23,177;CL:0000134,1.62e-07,354;CL:0002320,3.06e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.32e-31;42!CL:0000049;5.05e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.04e-19!102;UBERON:0003061!4.04e-19!102;UBERON:0002193!4.54e-17!112;UBERON:0002371!5.97e-17!80;UBERON:0001474!1.69e-15!86;UBERON:0004765!8.17e-14!101;UBERON:0001434!8.17e-14!101;UBERON:0002405!1.14e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.79e-07;15!UBERON:0000179;1.79e-07;15!UBERON:0000463;1.79e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-31,98;UBERON:0003061,1.37e-31,98;UBERON:0002193,5.10e-28,108;UBERON:0002371,2.96e-27,76;UBERON:0001474,4.78e-24,82;UBERON:0002405,1.51e-21,93;UBERON:0004765,2.34e-21,90;UBERON:0001434,1.31e-18,100;UBERON:0003081,6.60e-10,203;UBERON:0002204,4.09e-08,167;UBERON:0000178,1.02e-07,15;UBERON:0000179,1.02e-07,15;UBERON:0000463,1.02e-07,15;UBERON:0002384,3.99e-07,371 | |||
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| ||
|short_description=p3@TET2 | |||
}} | }} |
Latest revision as of 06:14, 20 September 2015
Short description: | p3@TET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TET2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 20bp_to_AK027819_5end |
EntrezGene: | TET2 |
HGNC: | 25941 |
UniProt: | Q6N021 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.55e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.55e-42 | 42 |
defensive cell | 2.25e-41 | 48 |
phagocyte | 2.25e-41 | 48 |
myeloid leukocyte | 3.36e-37 | 72 |
macrophage dendritic cell progenitor | 2.18e-33 | 61 |
granulocyte monocyte progenitor cell | 3.43e-33 | 67 |
monopoietic cell | 3.77e-33 | 59 |
monocyte | 3.77e-33 | 59 |
monoblast | 3.77e-33 | 59 |
promonocyte | 3.77e-33 | 59 |
myeloid lineage restricted progenitor cell | 3.72e-32 | 66 |
leukocyte | 8.54e-29 | 136 |
myeloid cell | 3.34e-28 | 108 |
common myeloid progenitor | 3.34e-28 | 108 |
nongranular leukocyte | 2.68e-26 | 115 |
hematopoietic stem cell | 1.22e-25 | 168 |
hematopoietic oligopotent progenitor cell | 5.80e-25 | 161 |
hematopoietic multipotent progenitor cell | 5.80e-25 | 161 |
hematopoietic lineage restricted progenitor cell | 2.21e-24 | 120 |
hematopoietic cell | 4.58e-23 | 177 |
mesenchymal cell | 1.62e-07 | 354 |
connective tissue cell | 3.06e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-31 | 98 |
blood island | 1.37e-31 | 98 |
hemolymphoid system | 5.10e-28 | 108 |
bone marrow | 2.96e-27 | 76 |
bone element | 4.78e-24 | 82 |
immune system | 1.51e-21 | 93 |
skeletal element | 2.34e-21 | 90 |
skeletal system | 1.31e-18 | 100 |
lateral plate mesoderm | 6.60e-10 | 203 |
musculoskeletal system | 4.09e-08 | 167 |
blood | 1.02e-07 | 15 |
haemolymphatic fluid | 1.02e-07 | 15 |
organism substance | 1.02e-07 | 15 |
connective tissue | 3.99e-07 | 371 |