FFCP PHASE1:Hg19::chr4:103749127..103749177,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:103749127..103749177,-
|short_description=p5@UBE2D3
|description=CAGE_peak_5_at_UBE2D3_5end
|association_with_transcript=0bp_to_ENST00000508818_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7323 | |EntrezGene=7323 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12476 | |HGNC=12476 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000508818_5end | |||
|cluster_id=chr4:103749127..103749177,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_5_at_UBE2D3_5end | |||
|id=chr4:103749127..103749177,- | |||
|ontology_enrichment_celltype=CL:0002057!1.14e-23!42;CL:0000860!1.12e-22!45;CL:0000766!1.24e-18!76;CL:0000839!1.66e-15!70;CL:0002009!2.11e-15!65;CL:0000557!3.48e-15!71;CL:0002194!1.79e-14!63;CL:0000576!1.79e-14!63;CL:0000040!1.79e-14!63;CL:0000559!1.79e-14!63;CL:0000548!2.32e-10!679;CL:0000004!2.32e-10!679;CL:0000255!2.32e-10!679;CL:0000763!2.64e-10!112;CL:0000049!2.64e-10!112;CL:0000012!3.67e-10!682;CL:0000063!6.79e-09!578;CL:0000034!1.00e-07!444;CL:0000003!1.25e-07!722;CL:0000723!3.07e-07!436;CL:0000048!6.26e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.83e-18;33!CL:0002057;1.83e-18;33!CL:0000473;1.97e-15;39!CL:0000234;1.97e-15;39!CL:0000576;2.94e-11;48!CL:0000766;1.24e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.14e-23,42;CL:0002057,1.14e-23,42;CL:0000473,1.25e-23,48;CL:0000234,1.25e-23,48;CL:0000766,4.11e-19,72;CL:0000839,6.42e-16,66;CL:0002009,7.29e-16,61;CL:0000557,1.42e-15,67;CL:0002194,6.50e-15,59;CL:0000576,6.50e-15,59;CL:0000040,6.50e-15,59;CL:0000559,6.50e-15,59;CL:0000763,2.31e-10,108;CL:0000049,2.31e-10,108;CL:0000034,6.14e-08,441;CL:0000723,1.91e-07,433;CL:0000048,3.93e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;3.03e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.00e-16!448;UBERON:0004120!2.00e-16!448;UBERON:0006603!2.00e-16!448;UBERON:0002204!1.33e-14!167;UBERON:0002390!3.77e-14!102;UBERON:0003061!3.77e-14!102;UBERON:0002371!1.39e-13!80;UBERON:0002193!1.19e-11!112;UBERON:0001474!1.84e-11!86;UBERON:0004765!3.80e-11!101;UBERON:0001434!3.80e-11!101;UBERON:0003081!1.96e-10!216;UBERON:0000480!9.93e-10!626;UBERON:0000467!1.18e-09!625;UBERON:0000468!1.47e-08!659;UBERON:0000922!1.96e-08!612;UBERON:0000923!4.04e-08!604;UBERON:0005291!4.04e-08!604;UBERON:0006598!4.04e-08!604;UBERON:0002532!4.04e-08!604;UBERON:0002050!6.27e-08!605;UBERON:0005423!6.27e-08!605;UBERON:0002405!6.06e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.73e-15,315;UBERON:0004120,5.73e-15,315;UBERON:0006603,5.73e-15,315;UBERON:0002390,2.55e-14,98;UBERON:0003061,2.55e-14,98;UBERON:0002204,7.18e-14,167;UBERON:0002371,7.58e-14,76;UBERON:0002193,9.78e-12,108;UBERON:0001474,1.27e-11,82;UBERON:0003081,2.70e-11,203;UBERON:0004765,6.31e-11,90;UBERON:0001434,3.47e-10,100;UBERON:0002050,5.85e-10,564;UBERON:0000923,2.88e-09,560;UBERON:0010316,2.88e-09,560;UBERON:0005291,2.88e-09,560;UBERON:0006598,2.88e-09,560;UBERON:0010317,2.88e-09,560;UBERON:0002532,2.88e-09,560;UBERON:0005423,8.06e-09,581;UBERON:0002405,1.15e-08,93;UBERON:0000922,1.60e-08,592 | |||
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| ||
|short_description=p5@UBE2D3 | |||
}} | }} |
Latest revision as of 05:07, 20 September 2015
Short description: | p5@UBE2D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_UBE2D3_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000508818_5end |
EntrezGene: | UBE2D3 |
HGNC: | 12476 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.14e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-23 | 42 |
defensive cell | 1.25e-23 | 48 |
phagocyte | 1.25e-23 | 48 |
myeloid leukocyte | 4.11e-19 | 72 |
myeloid lineage restricted progenitor cell | 6.42e-16 | 66 |
macrophage dendritic cell progenitor | 7.29e-16 | 61 |
granulocyte monocyte progenitor cell | 1.42e-15 | 67 |
monopoietic cell | 6.50e-15 | 59 |
monocyte | 6.50e-15 | 59 |
monoblast | 6.50e-15 | 59 |
promonocyte | 6.50e-15 | 59 |
myeloid cell | 2.31e-10 | 108 |
common myeloid progenitor | 2.31e-10 | 108 |
stem cell | 6.14e-08 | 441 |
somatic stem cell | 1.91e-07 | 433 |
multi fate stem cell | 3.93e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.73e-15 | 315 |
mesoderm-derived structure | 5.73e-15 | 315 |
presumptive mesoderm | 5.73e-15 | 315 |
hematopoietic system | 2.55e-14 | 98 |
blood island | 2.55e-14 | 98 |
musculoskeletal system | 7.18e-14 | 167 |
bone marrow | 7.58e-14 | 76 |
hemolymphoid system | 9.78e-12 | 108 |
bone element | 1.27e-11 | 82 |
lateral plate mesoderm | 2.70e-11 | 203 |
skeletal element | 6.31e-11 | 90 |
skeletal system | 3.47e-10 | 100 |
embryonic structure | 5.85e-10 | 564 |
germ layer | 2.88e-09 | 560 |
germ layer / neural crest | 2.88e-09 | 560 |
embryonic tissue | 2.88e-09 | 560 |
presumptive structure | 2.88e-09 | 560 |
germ layer / neural crest derived structure | 2.88e-09 | 560 |
epiblast (generic) | 2.88e-09 | 560 |
developing anatomical structure | 8.06e-09 | 581 |
immune system | 1.15e-08 | 93 |
embryo | 1.60e-08 | 592 |