FFCP PHASE1:Hg19::chr4:102268073..102268104,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:102268073..102268104,-
|short_description=p2@PPP3CA
|description=CAGE_peak_2_at_PPP3CA_5end
|association_with_transcript=-74bp_to_ENST00000507176_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5530 | |EntrezGene=5530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9314 | |HGNC=9314 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETC2 | |UniProt=E7ETC2 | ||
|association_with_transcript=-74bp_to_ENST00000507176_5end | |||
|cluster_id=chr4:102268073..102268104,- | |||
|coexpression_cluster_id=C35 | |||
|description=CAGE_peak_2_at_PPP3CA_5end | |||
|id=chr4:102268073..102268104,- | |||
|ontology_enrichment_celltype=CL:0000057!2.00e-08!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.01e-08,76;CL:0000048,2.83e-07,427;CL:0000723,6.86e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!8.32e-14!32;UBERON:0001893!3.77e-13!34;UBERON:0002780!5.11e-13!41;UBERON:0001890!5.11e-13!41;UBERON:0006240!5.11e-13!41;UBERON:0002791!1.51e-12!33;UBERON:0003080!1.84e-12!42;UBERON:0002619!2.69e-12!22;UBERON:0002020!6.17e-12!34;UBERON:0003528!6.17e-12!34;UBERON:0001049!7.65e-12!57;UBERON:0005068!7.65e-12!57;UBERON:0006241!7.65e-12!57;UBERON:0007135!7.65e-12!57;UBERON:0002616!2.20e-11!59;UBERON:0001950!4.59e-11!20;UBERON:0001017!3.16e-10!82;UBERON:0000955!1.17e-09!69;UBERON:0006238!1.17e-09!69;UBERON:0000956!1.19e-09!25;UBERON:0000203!1.19e-09!25;UBERON:0007023!6.43e-09!115;UBERON:0005743!8.42e-09!86;UBERON:0000153!1.23e-08!129;UBERON:0007811!1.23e-08!129;UBERON:0000033!2.01e-08!123;UBERON:0003075!1.21e-07!86;UBERON:0007284!1.21e-07!86;UBERON:0000073!1.52e-07!94;UBERON:0001016!1.52e-07!94;UBERON:0003056!2.46e-07!61;UBERON:0002346!6.19e-07!90;UBERON:0004573!9.05e-07!33;UBERON:0004571!9.05e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.47e-13;32!UBERON:0002619;1.72e-13;22!UBERON:0001893;9.21e-13;34!UBERON:0002791;2.90e-12;32!UBERON:0001950;3.87e-12;20!UBERON:0003528;2.29e-11;34!UBERON:0002020;2.29e-11;34!UBERON:0002780;1.14e-10;41!UBERON:0001890;1.14e-10;41!UBERON:0000956;2.42e-10;25!UBERON:0000203;2.42e-10;25!UBERON:0000073;1.23e-07;53!UBERON:0002616;1.23e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,7.30e-15,32;UBERON:0001893,3.55e-14,34;UBERON:0002780,3.74e-14,41;UBERON:0001890,3.74e-14,41;UBERON:0003080,3.74e-14,41;UBERON:0006240,3.74e-14,41;UBERON:0002619,1.64e-13,22;UBERON:0001049,1.89e-13,56;UBERON:0005068,1.89e-13,56;UBERON:0006241,1.89e-13,56;UBERON:0007135,1.89e-13,56;UBERON:0000073,2.21e-13,53;UBERON:0002616,2.21e-13,53;UBERON:0002791,3.08e-13,32;UBERON:0003528,7.31e-13,34;UBERON:0002020,7.31e-13,34;UBERON:0001950,3.52e-12,20;UBERON:0001017,1.37e-11,81;UBERON:0000955,4.75e-11,68;UBERON:0006238,4.75e-11,68;UBERON:0000956,2.23e-10,25;UBERON:0000203,2.23e-10,25;UBERON:0001016,1.71e-09,89;UBERON:0010314,4.26e-09,132;UBERON:0007023,1.96e-08,114;UBERON:0003075,4.81e-08,82;UBERON:0007284,4.81e-08,82;UBERON:0003056,1.21e-07,61;UBERON:0004111,1.26e-07,240;UBERON:0002346,3.94e-07,86 | |||
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| ||
|short_description=p2@PPP3CA | |||
}} | }} |
Latest revision as of 03:12, 20 September 2015
Short description: | p2@PPP3CA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PPP3CA_5end |
Coexpression cluster: | C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula |
Association with transcript: | -74bp_to_ENST00000507176_5end |
EntrezGene: | PPP3CA |
HGNC: | 9314 |
UniProt: | E7ETC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.01e-08 | 76 |
multi fate stem cell | 2.83e-07 | 427 |
somatic stem cell | 6.86e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 7.30e-15 | 32 |
telencephalon | 3.55e-14 | 34 |
regional part of forebrain | 3.74e-14 | 41 |
forebrain | 3.74e-14 | 41 |
anterior neural tube | 3.74e-14 | 41 |
future forebrain | 3.74e-14 | 41 |
regional part of cerebral cortex | 1.64e-13 | 22 |
neural tube | 1.89e-13 | 56 |
neural rod | 1.89e-13 | 56 |
future spinal cord | 1.89e-13 | 56 |
neural keel | 1.89e-13 | 56 |
regional part of nervous system | 2.21e-13 | 53 |
regional part of brain | 2.21e-13 | 53 |
regional part of telencephalon | 3.08e-13 | 32 |
brain grey matter | 7.31e-13 | 34 |
gray matter | 7.31e-13 | 34 |
neocortex | 3.52e-12 | 20 |
central nervous system | 1.37e-11 | 81 |
brain | 4.75e-11 | 68 |
future brain | 4.75e-11 | 68 |
cerebral cortex | 2.23e-10 | 25 |
pallium | 2.23e-10 | 25 |
nervous system | 1.71e-09 | 89 |
structure with developmental contribution from neural crest | 4.26e-09 | 132 |
adult organism | 1.96e-08 | 114 |
neural plate | 4.81e-08 | 82 |
presumptive neural plate | 4.81e-08 | 82 |
pre-chordal neural plate | 1.21e-07 | 61 |
anatomical conduit | 1.26e-07 | 240 |
neurectoderm | 3.94e-07 | 86 |