FFCP PHASE1:Hg19::chr3:98275070..98275077,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:98275070..98275077,-
|short_description=p@chr3:98275070..98275077,-
|description=CAGE_peak_at_chr3:98275070..98275077,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:98275070..98275077,- | |||
|coexpression_cluster_id=C1931 | |||
|description=CAGE_peak_at_chr3:98275070..98275077,- | |||
|id=chr3:98275070..98275077,- | |||
|ontology_enrichment_celltype=CL:0000988!1.73e-10!182;CL:0002032!4.01e-09!165;CL:0000837!4.01e-09!165;CL:0000945!8.77e-09!24;CL:0000826!8.77e-09!24;CL:0000037!1.63e-08!172;CL:0000566!1.63e-08!172;CL:0000785!1.79e-08!2;CL:0000955!1.79e-08!2;CL:0000818!1.79e-08!2;CL:0000954!1.79e-08!2;CL:0000816!1.79e-08!2;CL:0000838!5.52e-08!52;CL:0000542!8.69e-08!53;CL:0000051!8.69e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0002127;1.42e-19;1!CL:0000911;1.42e-19;1!CL:0000814;1.42e-19;1!CL:1000415;1.80e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,1.08e-19,1;CL:0000914,1.08e-19,1;CL:0000911,1.08e-19,1;CL:0000814,1.08e-19,1;CL:0002042,1.08e-19,1;CL:0002039,1.08e-19,1;CL:0002040,1.08e-19,1;CL:0002041,1.08e-19,1;CL:0000893,1.57e-10,2;CL:0002489,1.57e-10,2;CL:0000809,1.57e-10,2;CL:0000808,1.57e-10,2;CL:0000894,1.57e-10,2;CL:0000806,1.57e-10,2;CL:0000807,1.57e-10,2;CL:0000805,1.57e-10,2;CL:0002425,1.57e-10,2;CL:1000415,1.72e-10,2 | |||
|ontology_enrichment_development_v019=CL:0002425;1.80e-10;2 | |||
|ontology_enrichment_disease=DOID:2531!1.19e-11!51;DOID:0060083!1.19e-11!51;DOID:0060058!2.54e-09!10;DOID:0050686!4.57e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:630;3.56e-19;1!DOID:0050177;3.56e-19;1!DOID:0060060;3.56e-19;1!DOID:0060061;3.56e-19;1!DOID:0050427;3.56e-19;1!DOID:8691;3.56e-19;1!DOID:2531;3.39e-10;51!DOID:0060083;3.39e-10;51!DOID:0060058;4.18e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.25e-19,1;DOID:0050177,2.25e-19,1;DOID:0050427,2.25e-19,1;DOID:0060060,3.91e-19,1;DOID:0060061,3.91e-19,1;DOID:8691,3.91e-19,1;DOID:2531,1.43e-12,51;DOID:0060083,1.43e-12,51;DOID:0060058,4.04e-08,10;DOID:1240,9.83e-08,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;8.94e-20;1!UBERON:0009842;8.94e-20;1!UBERON:0003704;8.94e-20;1!UBERON:0001171;8.94e-20;1!UBERON:0001172;8.94e-20;1!UBERON:0007195;3.56e-19;1!UBERON:0002294;1.82e-11;7!UBERON:0001173;1.82e-11;7!UBERON:0001280;1.82e-07;3!UBERON:0004647;1.82e-07;3!UBERON:0002110;2.12e-07;3!UBERON:0002106;2.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,8.95e-20,1;UBERON:0009842,8.95e-20,1;UBERON:0003704,8.95e-20,1;UBERON:0001171,8.95e-20,1;UBERON:0001172,8.95e-20,1;UBERON:0007195,5.62e-19,1;UBERON:0004177,2.30e-11,7;UBERON:0005057,2.30e-11,7;UBERON:0002294,3.92e-09,9;UBERON:0001173,3.92e-09,9;UBERON:0004912,3.92e-09,9;UBERON:0001280,1.82e-07,3;UBERON:0004647,1.82e-07,3;UBERON:0005171,1.82e-07,3;UBERON:0002110,2.05e-07,3;UBERON:0006242,2.05e-07,3;UBERON:0002106,2.63e-07,3;UBERON:0004854,2.63e-07,3;UBERON:0009034,2.63e-07,3;UBERON:0002095,2.63e-07,3;UBERON:0004782,2.63e-07,3;UBERON:0003281,2.63e-07,3;UBERON:0009664,2.63e-07,3;UBERON:0002296,2.63e-07,3;UBERON:0005602,2.63e-07,3;UBERON:0001179,2.63e-07,3;UBERON:0006293,2.63e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.328402357799783,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.334231370655521,0,0,0,0.25618263945135,0.130059347559878,0.986627427622057,0.276350017785848,0.869409257205157,0,0,0,0.566546713487831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69004345584465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.635020748171649,0,1.12318871245384,0,0,0,0.677167111206413,1.4452926759333,2.01799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.306806047506464,0.492339221844278,0,0,0,0.511572370226872,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76008784295104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.741383633679017,0.626531697032732,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64524106830061,0,0.39961921916426,0,0,0,0,0.372757606696298,0,0,0,0.101998217636322,0.866851769704557,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0.327609848846413,0,0,1.19992437512958,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49911733887393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.328402357799783,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.334231370655521,0,0,0,0.25618263945135,0.130059347559878,0.986627427622057,0.276350017785848,0.869409257205157,0,0,0,0.566546713487831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69004345584465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.635020748171649,0,1.12318871245384,0,0,0,0.677167111206413,1.4452926759333,2.01799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.306806047506464,0.492339221844278,0,0,0,0.511572370226872,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76008784295104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.741383633679017,0.626531697032732,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64524106830061,0,0.39961921916426,0,0,0,0,0.372757606696298,0,0,0,0.101998217636322,0.866851769704557,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0.327609848846413,0,0,1.19992437512958,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49911733887393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | ||
|short_description=p@chr3:98275070..98275077,- | |||
}} | }} |
Latest revision as of 00:02, 30 July 2015
Short description: | p@chr3:98275070..98275077, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98275070..98275077, - |
Coexpression cluster: | C1931_cholangiocellular_NK_cord_gall_glioma_CD4_mycosis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 1.08e-19 | 1 |
immature NK T cell | 1.08e-19 | 1 |
effector T cell | 1.08e-19 | 1 |
mature NK T cell | 1.08e-19 | 1 |
immature NK T cell stage IV | 1.08e-19 | 1 |
immature NK T cell stage I | 1.08e-19 | 1 |
immature NK T cell stage II | 1.08e-19 | 1 |
immature NK T cell stage III | 1.08e-19 | 1 |
thymocyte | 1.57e-10 | 2 |
double negative thymocyte | 1.57e-10 | 2 |
double-positive, alpha-beta thymocyte | 1.57e-10 | 2 |
DN4 thymocyte | 1.57e-10 | 2 |
DN1 thymic pro-T cell | 1.57e-10 | 2 |
DN2 thymocyte | 1.57e-10 | 2 |
DN3 thymocyte | 1.57e-10 | 2 |
immature single positive thymocyte | 1.57e-10 | 2 |
early T lineage precursor | 1.57e-10 | 2 |
epithelial cell of gall bladder | 1.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 8.95e-20 | 1 |
acinus | 8.95e-20 | 1 |
intrahepatic bile duct | 8.95e-20 | 1 |
portal lobule | 8.95e-20 | 1 |
hepatic acinus | 8.95e-20 | 1 |
stroma of bone marrow | 5.62e-19 | 1 |
hemopoietic organ | 2.30e-11 | 7 |
immune organ | 2.30e-11 | 7 |
biliary system | 3.92e-09 | 9 |
biliary tree | 3.92e-09 | 9 |
biliary bud | 3.92e-09 | 9 |
liver parenchyma | 1.82e-07 | 3 |
liver lobule | 1.82e-07 | 3 |
hepatic duct | 1.82e-07 | 3 |
gallbladder | 2.05e-07 | 3 |
gall bladder primordium | 2.05e-07 | 3 |
spleen | 2.63e-07 | 3 |
gastrointestinal system mesentery | 2.63e-07 | 3 |
stomach region | 2.63e-07 | 3 |
mesentery | 2.63e-07 | 3 |
gastrointestinal system serosa | 2.63e-07 | 3 |
mesentery of stomach | 2.63e-07 | 3 |
gut mesentery | 2.63e-07 | 3 |
dorsal mesentery | 2.63e-07 | 3 |
dorsal mesogastrium | 2.63e-07 | 3 |
peritoneal cavity | 2.63e-07 | 3 |
spleen primordium | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.25e-19 | 1 |
monogenic disease | 2.25e-19 | 1 |
xeroderma pigmentosum | 2.25e-19 | 1 |
non-Hodgkin lymphoma | 3.91e-19 | 1 |
cutaneous T cell lymphoma | 3.91e-19 | 1 |
mycosis fungoides | 3.91e-19 | 1 |
hematologic cancer | 1.43e-12 | 51 |
immune system cancer | 1.43e-12 | 51 |
lymphoma | 4.04e-08 | 10 |
leukemia | 9.83e-08 | 39 |