FFCP PHASE1:Hg19::chr3:63898321..63898396,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:63898321..63898396,+
|short_description=p3@ATXN7
|description=CAGE_peak_3_at_ATXN7_5end
|association_with_transcript=46bp_to_BC166666_5end
|EntrezGene=631...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6314 | |EntrezGene=6314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10560 | |HGNC=10560 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=46bp_to_BC166666_5end | |||
|cluster_id=chr3:63898321..63898396,+ | |||
|coexpression_cluster_id=C175 | |||
|description=CAGE_peak_3_at_ATXN7_5end | |||
|id=chr3:63898321..63898396,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.16e-26!140;CL:0000766!4.49e-20!76;CL:0002057!5.51e-19!42;CL:0002031!6.67e-19!124;CL:0000860!3.62e-18!45;CL:0000557!4.57e-17!71;CL:0002087!1.60e-16!119;CL:0000037!3.50e-16!172;CL:0000566!3.50e-16!172;CL:0000839!4.36e-16!70;CL:0000988!2.08e-15!182;CL:0002009!1.47e-14!65;CL:0002032!7.70e-14!165;CL:0000837!7.70e-14!165;CL:0002194!1.72e-13!63;CL:0000576!1.72e-13!63;CL:0000040!1.72e-13!63;CL:0000559!1.72e-13!63;CL:0000763!8.18e-11!112;CL:0000049!8.18e-11!112;CL:0000094!8.36e-07!8;CL:0000451!9.11e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-15;33!CL:0002057;1.48e-15;33!CL:0000576;1.76e-10;48!CL:0000766;4.49e-10;69!CL:0000473;4.54e-10;39!CL:0000234;4.54e-10;39!CL:0000451;1.90e-07;10!CL:0000094;2.12e-07;8!CL:0000738;7.25e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.39e-28,136;CL:0000766,2.21e-21,72;CL:0000860,1.21e-20,42;CL:0002057,1.21e-20,42;CL:0002031,4.95e-20,120;CL:0000037,3.41e-18,168;CL:0000557,4.53e-18,67;CL:0000988,8.02e-18,177;CL:0002087,2.76e-17,115;CL:0000839,5.46e-17,66;CL:0000473,2.41e-16,48;CL:0000234,2.41e-16,48;CL:0002032,1.42e-15,161;CL:0000837,1.42e-15,161;CL:0002009,2.57e-15,61;CL:0002194,3.84e-14,59;CL:0000576,3.84e-14,59;CL:0000040,3.84e-14,59;CL:0000559,3.84e-14,59;CL:0000763,2.14e-12,108;CL:0000049,2.14e-12,108;CL:0000094,2.63e-07,8;CL:0000451,2.89e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.64e-23!102;UBERON:0003061!1.64e-23!102;UBERON:0002193!2.09e-19!112;UBERON:0002371!1.10e-15!80;UBERON:0001474!2.72e-15!86;UBERON:0007023!6.74e-13!115;UBERON:0004765!1.80e-11!101;UBERON:0001434!1.80e-11!101;UBERON:0002405!2.26e-09!115;UBERON:0000178!4.72e-09!15;UBERON:0000179!4.72e-09!15;UBERON:0000463!4.72e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.03e-10;15!UBERON:0000179;6.03e-10;15!UBERON:0000463;6.03e-10;15!UBERON:0002390;1.18e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.77e-25,98;UBERON:0003061,4.77e-25,98;UBERON:0002193,1.69e-20,108;UBERON:0002371,1.71e-16,76;UBERON:0001474,1.01e-15,82;UBERON:0002405,1.43e-13,93;UBERON:0004765,3.85e-13,90;UBERON:0007023,8.73e-13,114;UBERON:0001434,7.91e-11,100;UBERON:0000178,9.14e-10,15;UBERON:0000179,9.14e-10,15;UBERON:0000463,9.14e-10,15 | |||
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| ||
|short_description=p3@ATXN7 | |||
}} | }} |
Latest revision as of 08:56, 19 September 2015
Short description: | p3@ATXN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ATXN7_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | 46bp_to_BC166666_5end |
EntrezGene: | ATXN7 |
HGNC: | 10560 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.39e-28 | 136 |
myeloid leukocyte | 2.21e-21 | 72 |
classical monocyte | 1.21e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.21e-20 | 42 |
hematopoietic lineage restricted progenitor cell | 4.95e-20 | 120 |
hematopoietic stem cell | 3.41e-18 | 168 |
granulocyte monocyte progenitor cell | 4.53e-18 | 67 |
hematopoietic cell | 8.02e-18 | 177 |
nongranular leukocyte | 2.76e-17 | 115 |
myeloid lineage restricted progenitor cell | 5.46e-17 | 66 |
defensive cell | 2.41e-16 | 48 |
phagocyte | 2.41e-16 | 48 |
hematopoietic oligopotent progenitor cell | 1.42e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.42e-15 | 161 |
macrophage dendritic cell progenitor | 2.57e-15 | 61 |
monopoietic cell | 3.84e-14 | 59 |
monocyte | 3.84e-14 | 59 |
monoblast | 3.84e-14 | 59 |
promonocyte | 3.84e-14 | 59 |
myeloid cell | 2.14e-12 | 108 |
common myeloid progenitor | 2.14e-12 | 108 |
granulocyte | 2.63e-07 | 8 |
dendritic cell | 2.89e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.77e-25 | 98 |
blood island | 4.77e-25 | 98 |
hemolymphoid system | 1.69e-20 | 108 |
bone marrow | 1.71e-16 | 76 |
bone element | 1.01e-15 | 82 |
immune system | 1.43e-13 | 93 |
skeletal element | 3.85e-13 | 90 |
adult organism | 8.73e-13 | 114 |
skeletal system | 7.91e-11 | 100 |
blood | 9.14e-10 | 15 |
haemolymphatic fluid | 9.14e-10 | 15 |
organism substance | 9.14e-10 | 15 |