FFCP PHASE1:Hg19::chr3:42850917..42850927,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:42850917..42850927,+
|short_description=p4@CCBP2
|description=CAGE_peak_4_at_CCBP2_5end
|association_with_transcript=0bp_to_ENST00000463699_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1238 | |EntrezGene=1238 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1565 | |HGNC=1565 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000463699_5end | |||
|cluster_id=chr3:42850917..42850927,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_4_at_CCBP2_5end | |||
|id=chr3:42850917..42850927,+ | |||
|ontology_enrichment_celltype=CL:1000507!1.95e-17!12;CL:1000494!1.95e-17!12;CL:1000449!1.00e-12!16;CL:0002541!4.13e-12!3;CL:0000349!2.90e-11!3;CL:0002577!2.90e-11!3;CL:1000497!3.72e-11!18;CL:0002518!3.72e-11!18;CL:0000239!4.09e-11!3;CL:1000615!4.09e-11!3;CL:0002306!4.09e-11!3;CL:0000039!1.79e-08!7;CL:0000586!1.79e-08!7;CL:0002536!3.03e-08!2;CL:0002537!2.95e-07!5;CL:0002076!4.36e-07!43;CL:0000223!9.59e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.50e-38;19!CL:0002541;8.17e-24;3!CL:1000507;7.30e-18;10!CL:1000494;7.30e-18;10!CL:0002536;1.23e-15;2!CL:0002537;3.20e-14;5!CL:1000449;7.16e-12;15!CL:0002577;7.30e-11;3!CL:1000497;1.86e-10;17!CL:0002518;1.86e-10;17!CL:0000239;2.05e-10;3!CL:1000615;2.05e-10;3!CL:0002306;2.05e-10;3!CL:0000039;2.47e-10;7!CL:0000586;2.47e-10;7!CL:0002681;7.50e-10;12!CL:0002584;7.50e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,7.07e-38,19;CL:0002541,7.86e-24,3;CL:1000507,7.17e-18,10;CL:1000494,7.17e-18,10;CL:0002536,1.15e-15,2;CL:0002537,3.20e-14,5;CL:1000449,7.08e-12,15;CL:0002577,7.30e-11,3;CL:1000497,1.84e-10,17;CL:0002518,1.84e-10,17;CL:0000239,2.05e-10,3;CL:1000615,2.05e-10,3;CL:0002306,2.05e-10,3;CL:0000039,2.47e-10,7;CL:0000586,2.47e-10,7;CL:0002681,7.68e-10,12;CL:0002584,7.68e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.58e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;4.35e-09;1!DOID:10165;4.35e-09;1!DOID:1798;4.35e-09;1!DOID:178;1.47e-08;1!DOID:326;1.47e-08;1!DOID:3978;1.47e-08;1!DOID:3394;1.47e-08;1!DOID:5844;1.47e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,4.52e-09,1;DOID:10165,4.52e-09,1;DOID:1798,4.52e-09,1;DOID:178,1.32e-08,1;DOID:326,1.32e-08,1;DOID:3978,1.32e-08,1;DOID:3394,1.32e-08,1;DOID:5844,1.32e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.02e-35!14;UBERON:0000158!2.02e-35!14;UBERON:0003124!4.13e-25!7;UBERON:0000478!1.90e-19!24;UBERON:0009773!1.95e-17!12;UBERON:0001231!1.95e-17!12;UBERON:0004810!1.95e-17!12;UBERON:0006555!4.79e-15!17;UBERON:0005103!4.79e-15!17;UBERON:0000083!4.79e-15!17;UBERON:0009201!4.79e-15!17;UBERON:0004819!4.79e-15!17;UBERON:0006553!4.79e-15!17;UBERON:0003074!4.79e-15!17;UBERON:0003060!4.79e-15!17;UBERON:0001987!9.42e-15!4;UBERON:0004340!9.42e-15!4;UBERON:0000080!4.11e-14!18;UBERON:0002120!4.11e-14!18;UBERON:0004875!4.11e-14!18;UBERON:0005721!4.11e-14!18;UBERON:0005754!4.11e-14!18;UBERON:0007297!4.11e-14!18;UBERON:0006554!8.96e-14!44;UBERON:0004923!1.06e-13!57;UBERON:0001008!2.17e-13!45;UBERON:0002113!4.11e-13!27;UBERON:0003918!4.11e-13!27;UBERON:0005095!4.11e-13!27;UBERON:0007687!4.11e-13!27;UBERON:0000305!4.98e-13!7;UBERON:0004211!1.00e-12!16;UBERON:0001285!1.00e-12!16;UBERON:0007684!1.00e-12!16;UBERON:0003220!1.00e-12!16;UBERON:0004208!1.00e-12!16;UBERON:0004876!1.58e-12!20;UBERON:0000476!4.13e-12!3;UBERON:0000920!4.13e-12!3;UBERON:0003887!7.55e-12!21;UBERON:0004871!2.37e-11!8;UBERON:0006853!4.09e-11!3;UBERON:0007685!4.09e-11!3;UBERON:0004134!4.09e-11!3;UBERON:0000489!1.06e-10!32;UBERON:0004175!1.08e-09!25;UBERON:0000995!2.22e-09!21;UBERON:0000058!3.05e-09!26;UBERON:0003064!5.62e-09!37;UBERON:0005795!6.84e-09!22;UBERON:0003975!6.84e-09!22;UBERON:0000464!4.62e-08!104;UBERON:0002553!1.59e-07!70;UBERON:0000064!2.34e-07!219;UBERON:0005156!6.85e-07!59;UBERON:0000990!6.85e-07!59;UBERON:0004119!9.75e-07!169;UBERON:0000925!9.75e-07!169;UBERON:0006595!9.75e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.80e-47;10!UBERON:0000158;3.80e-47;10!UBERON:0000478;4.81e-36;24!UBERON:0000305;1.64e-26;7!UBERON:0003124;8.17e-24;3!UBERON:0000920;8.17e-24;3!UBERON:0004211;7.30e-18;10!UBERON:0009773;7.30e-18;10!UBERON:0001231;7.30e-18;10!UBERON:0004810;7.30e-18;10!UBERON:0001987;1.39e-17;4!UBERON:0006555;7.16e-12;15!UBERON:0004819;7.16e-12;15!UBERON:0001285;7.16e-12;15!UBERON:0007684;7.16e-12;15!UBERON:0006853;2.05e-10;3!UBERON:0007685;2.05e-10;3!UBERON:0004134;2.05e-10;3!UBERON:0001225;7.50e-10;12!UBERON:0008987;7.50e-10;12!UBERON:0001301;1.99e-08;1!UBERON:0001851;6.55e-08;15!UBERON:0000353;6.55e-08;15!UBERON:0002113;2.35e-07;24!UBERON:0011143;2.35e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.10e-63,14;UBERON:0000158,4.10e-63,14;UBERON:0003124,9.72e-39,7;UBERON:0000478,4.57e-36,24;UBERON:0000305,1.56e-26,7;UBERON:0000920,7.86e-24,3;UBERON:0004871,3.28e-23,8;UBERON:0004810,7.17e-18,10;UBERON:0001987,1.39e-17,4;UBERON:0004340,1.39e-17,4;UBERON:0006555,1.12e-15,16;UBERON:0004819,1.12e-15,16;UBERON:0004923,3.17e-14,66;UBERON:0004211,7.08e-12,15;UBERON:0009773,7.08e-12,15;UBERON:0001231,7.08e-12,15;UBERON:0001285,7.08e-12,15;UBERON:0007684,7.08e-12,15;UBERON:0004208,7.08e-12,15;UBERON:0006554,3.43e-11,47;UBERON:0001008,6.26e-11,48;UBERON:0006853,2.05e-10,3;UBERON:0007685,2.05e-10,3;UBERON:0004134,2.05e-10,3;UBERON:0001225,7.68e-10,12;UBERON:0008987,7.68e-10,12;UBERON:0002113,1.79e-09,26;UBERON:0003918,1.79e-09,26;UBERON:0011143,1.79e-09,26;UBERON:0005095,1.79e-09,26;UBERON:0007687,1.79e-09,26;UBERON:0001301,2.22e-08,1;UBERON:0001851,6.67e-08,15;UBERON:0000353,6.67e-08,15;UBERON:0000489,7.22e-08,31;UBERON:0004175,2.78e-07,25 | |||
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| ||
|short_description=p4@CCBP2 | |||
}} | }} |
Latest revision as of 06:54, 18 September 2015
Short description: | p4@CCBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCBP2_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000463699_5end |
EntrezGene: | CCBP2 |
HGNC: | 1565 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 7.07e-38 | 19 |
chorionic membrane mesenchymal stem cell | 7.86e-24 | 3 |
kidney tubule cell | 7.17e-18 | 10 |
nephron tubule epithelial cell | 7.17e-18 | 10 |
amniotic epithelial cell | 1.15e-15 | 2 |
amnion mesenchymal stem cell | 3.20e-14 | 5 |
epithelial cell of nephron | 7.08e-12 | 15 |
placental epithelial cell | 7.30e-11 | 3 |
kidney cell | 1.84e-10 | 17 |
kidney epithelial cell | 1.84e-10 | 17 |
brush border epithelial cell | 2.05e-10 | 3 |
kidney cortex tubule cell | 2.05e-10 | 3 |
epithelial cell of proximal tubule | 2.05e-10 | 3 |
germ line cell | 2.47e-10 | 7 |
germ cell | 2.47e-10 | 7 |
kidney cortical cell | 7.68e-10 | 12 |
renal cortical epithelial cell | 7.68e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.10e-63 | 14 |
membranous layer | 4.10e-63 | 14 |
chorion | 9.72e-39 | 7 |
extraembryonic structure | 4.57e-36 | 24 |
amnion | 1.56e-26 | 7 |
egg chorion | 7.86e-24 | 3 |
somatic layer of lateral plate mesoderm | 3.28e-23 | 8 |
nephron tubule epithelium | 7.17e-18 | 10 |
placenta | 1.39e-17 | 4 |
allantois | 1.39e-17 | 4 |
excretory tube | 1.12e-15 | 16 |
kidney epithelium | 1.12e-15 | 16 |
organ component layer | 3.17e-14 | 66 |
nephron epithelium | 7.08e-12 | 15 |
renal tubule | 7.08e-12 | 15 |
nephron tubule | 7.08e-12 | 15 |
nephron | 7.08e-12 | 15 |
uriniferous tubule | 7.08e-12 | 15 |
nephrogenic mesenchyme | 7.08e-12 | 15 |
urinary system structure | 3.43e-11 | 47 |
renal system | 6.26e-11 | 48 |
renal cortex tubule | 2.05e-10 | 3 |
region of nephron tubule | 2.05e-10 | 3 |
proximal tubule | 2.05e-10 | 3 |
cortex of kidney | 7.68e-10 | 12 |
renal parenchyma | 7.68e-10 | 12 |
kidney | 1.79e-09 | 26 |
kidney mesenchyme | 1.79e-09 | 26 |
upper urinary tract | 1.79e-09 | 26 |
kidney rudiment | 1.79e-09 | 26 |
kidney field | 1.79e-09 | 26 |
epididymis | 2.22e-08 | 1 |
cortex | 6.67e-08 | 15 |
parenchyma | 6.67e-08 | 15 |
cavitated compound organ | 7.22e-08 | 31 |
internal genitalia | 2.78e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 4.52e-09 | 1 |
endocrine pancreas cancer | 4.52e-09 | 1 |
pancreatic endocrine carcinoma | 4.52e-09 | 1 |
vascular disease | 1.32e-08 | 1 |
ischemia | 1.32e-08 | 1 |
extrinsic cardiomyopathy | 1.32e-08 | 1 |
myocardial ischemia | 1.32e-08 | 1 |
myocardial infarction | 1.32e-08 | 1 |