FFCP PHASE1:Hg19::chr3:19988649..19988692,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:19988649..19988692,+
|short_description=p3@RAB5A
|description=CAGE_peak_3_at_RAB5A_5end
|association_with_transcript=-49bp_to_ENST00000443878_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5868 | |EntrezGene=5868 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |HGNC=9783 | ||
|TSSclassifier=strong | |||
|UniProt=C9J3X8 | |UniProt=C9J3X8 | ||
|association_with_transcript=-49bp_to_ENST00000443878_5end | |||
|cluster_id=chr3:19988649..19988692,+ | |||
|description=CAGE_peak_3_at_RAB5A_5end | |||
|id=chr3:19988649..19988692,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.60e-31!115;UBERON:0001049!5.28e-16!57;UBERON:0005068!5.28e-16!57;UBERON:0006241!5.28e-16!57;UBERON:0007135!5.28e-16!57;UBERON:0002780!3.19e-14!41;UBERON:0001890!3.19e-14!41;UBERON:0006240!3.19e-14!41;UBERON:0003080!3.01e-13!42;UBERON:0002616!6.54e-13!59;UBERON:0000073!3.06e-12!94;UBERON:0001016!3.06e-12!94;UBERON:0001017!5.29e-12!82;UBERON:0005743!5.60e-12!86;UBERON:0002020!1.79e-11!34;UBERON:0003528!1.79e-11!34;UBERON:0003075!2.19e-11!86;UBERON:0007284!2.19e-11!86;UBERON:0001893!3.73e-11!34;UBERON:0002791!1.13e-10!33;UBERON:0001869!2.06e-10!32;UBERON:0000955!5.25e-10!69;UBERON:0006238!5.25e-10!69;UBERON:0002346!9.38e-10!90;UBERON:0002619!4.67e-09!22;UBERON:0003056!3.93e-08!61;UBERON:0000956!4.34e-08!25;UBERON:0000203!4.34e-08!25;UBERON:0001950!4.72e-08!20;UBERON:0000153!3.25e-07!129;UBERON:0007811!3.25e-07!129;UBERON:0004121!6.79e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.77e-10;41!UBERON:0001890;1.77e-10;41!UBERON:0001893;5.65e-10;34!UBERON:0003528;9.90e-10;34!UBERON:0002020;9.90e-10;34!UBERON:0000073;2.02e-09;53!UBERON:0002616;2.02e-09;53!UBERON:0001869;2.27e-09;32!UBERON:0002791;2.77e-09;32!UBERON:0002619;4.34e-09;22!UBERON:0007023;1.05e-08;114!UBERON:0000956;4.30e-08;25!UBERON:0000203;4.30e-08;25!UBERON:0001950;4.56e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.47e-30,114;UBERON:0001049,6.42e-17,56;UBERON:0005068,6.42e-17,56;UBERON:0006241,6.42e-17,56;UBERON:0007135,6.42e-17,56;UBERON:0000073,2.29e-15,53;UBERON:0002616,2.29e-15,53;UBERON:0002780,3.19e-14,41;UBERON:0001890,3.19e-14,41;UBERON:0003080,3.19e-14,41;UBERON:0006240,3.19e-14,41;UBERON:0001016,8.16e-13,89;UBERON:0001017,1.33e-12,81;UBERON:0003075,1.50e-11,82;UBERON:0007284,1.50e-11,82;UBERON:0003528,1.79e-11,34;UBERON:0002020,1.79e-11,34;UBERON:0001893,3.73e-11,34;UBERON:0000955,1.36e-10,68;UBERON:0006238,1.36e-10,68;UBERON:0001869,2.06e-10,32;UBERON:0002791,2.55e-10,32;UBERON:0002346,7.37e-10,86;UBERON:0002619,4.67e-09,22;UBERON:0003056,5.73e-09,61;UBERON:0010314,8.44e-09,132;UBERON:0011216,1.33e-08,223;UBERON:0000956,4.34e-08,25;UBERON:0000203,4.34e-08,25;UBERON:0001950,4.72e-08,20;UBERON:0010371,7.13e-08,104 | |||
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| ||
|short_description=p3@RAB5A | |||
}} | }} |
Latest revision as of 18:02, 17 September 2015
Short description: | p3@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB5A_5end |
Coexpression cluster: | NA |
Association with transcript: | -49bp_to_ENST00000443878_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | C9J3X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.47e-30 | 114 |
neural tube | 6.42e-17 | 56 |
neural rod | 6.42e-17 | 56 |
future spinal cord | 6.42e-17 | 56 |
neural keel | 6.42e-17 | 56 |
regional part of nervous system | 2.29e-15 | 53 |
regional part of brain | 2.29e-15 | 53 |
regional part of forebrain | 3.19e-14 | 41 |
forebrain | 3.19e-14 | 41 |
anterior neural tube | 3.19e-14 | 41 |
future forebrain | 3.19e-14 | 41 |
nervous system | 8.16e-13 | 89 |
central nervous system | 1.33e-12 | 81 |
neural plate | 1.50e-11 | 82 |
presumptive neural plate | 1.50e-11 | 82 |
brain grey matter | 1.79e-11 | 34 |
gray matter | 1.79e-11 | 34 |
telencephalon | 3.73e-11 | 34 |
brain | 1.36e-10 | 68 |
future brain | 1.36e-10 | 68 |
cerebral hemisphere | 2.06e-10 | 32 |
regional part of telencephalon | 2.55e-10 | 32 |
neurectoderm | 7.37e-10 | 86 |
regional part of cerebral cortex | 4.67e-09 | 22 |
pre-chordal neural plate | 5.73e-09 | 61 |
structure with developmental contribution from neural crest | 8.44e-09 | 132 |
organ system subdivision | 1.33e-08 | 223 |
cerebral cortex | 4.34e-08 | 25 |
pallium | 4.34e-08 | 25 |
neocortex | 4.72e-08 | 20 |
ecto-epithelium | 7.13e-08 | 104 |